Erigeron canadensis (horseweed): 122579939
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Entry
122579939 CDS
T07610
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122579939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122579939
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122579939
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GFIT
Motif
Pfam:
LRR_6
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
122579939
NCBI-ProteinID:
XP_043608141
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Position
8:complement(28770929..28776026)
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AA seq
360 aa
AA seq
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MMKGGGDELEVRFDNLMVGVGRVIRDWNEIPMELLLRIVSLLDDHRTVVVASAVCLGWRH
ALSSGLTHFSFSWCKNNMNNLVNSLAPKFKNLRSLSLRQDKPQLYDNALETIANNCHDLE
DLDLSKSFKLTDQSLYALAHGCPNLVKLNVSGCSSFSDNALADLSGYCRKLKVLNLCGCV
KGASDSALKAIGYNCSQLQSLNLGWCEDVGDAGVMSLAYGCPDLRALDLCGCVLITDESV
IALANNCLHLSSLGLYYCQNLTDRAIYALAQSRLKNKNQVWDSVKSSSYKDEGLMKLNIS
QCTALTPPAVQALCDSFPALHTCPGRHSLIISGCLNLTSVHCACAFQAHRAVKTVTHQAY
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaggtggtggtgatgagttggaggtgcgatttgataacttgatggtgggagtg
gggagagtgatcagagattggaacgagataccaatggagctattgttaaggattgtgtcg
ttgttggatgatcatcgtacggtggttgttgcttctgctgtttgtcttggttggagacat
gctttgtcttcagggcttactcatttctcattctcttggtgcaaaaacaacatgaataac
ttggtgaattctcttgctcccaagttcaaaaacttgaggtctctgagtcttcgtcaagat
aaaccacagttatatgataatgccttagagacgattgcaaataactgtcacgacttggag
gatcttgacctcagcaagagctttaaactcaccgatcaatctttgtatgctttggctcat
ggttgtccaaaccttgtgaagctcaacgtcagtggatgctcttcatttagtgataatgcc
cttgcggatctcagtggttattgtagaaaattaaaagtcttgaatctttgtggatgcgtt
aaaggtgcatctgatagtgccttgaaggcaatcggatataactgcagtcaactccagtca
ttgaatctgggatggtgtgaggatgttggcgatgctggagtaatgagtttagcatatggc
tgccctgatcttcgtgcacttgacttgtgtggttgtgttcttattacagatgaaagtgtg
atagccctggcaaataactgcttacatttgagttctctgggtctctactactgtcaaaat
ctcacagatcgggctatatacgctttggcacaaagtcgacttaagaacaagaaccaggtg
tgggattcggttaaaagcagcagttacaaggatgaagggctcatgaaactgaacatcagt
caatgcaccgccttaacgccacctgctgttcaggcactatgtgattcatttcctgcactc
catacatgccccggtaggcactctctcattataagtggatgcttgaatttaacttccgtc
cattgtgcatgtgcttttcaagcacatcgggcagtcaagacagttactcatcaagcatat
tga
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