Erigeron canadensis (horseweed): 122580335
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Entry
122580335 CDS
T07610
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122580335
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122580335
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122580335
NCBI-ProteinID:
XP_043608541
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Position
8:918107..919751
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AA seq
396 aa
AA seq
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MKVVKFQLVLVVCYVFVIFVMAGSNDTISNRRVLTRHKRHNGPCVAHNLIDKCWRCDPKW
ADNRQRIADCAQGFGHNAKGGKGGKFYVVTSAQDNDMVNPKPGTLRHAVLQPGPLWIIFN
RHMNIKLRQELIFTSDKTVDGRGFHIHIFGGAGIMLQNIRNVIIFNIHLYDITPASGGMI
RSTPDHVGIRGASDGDAICIFGSTDIWIDHCSFIGSYDGLIDIVARSTDITVSNNHFVRH
DKALLFGASDETPDENMRVTLAYNHFGKGLTQRLPAVRWGFVHVVNNDYTMWKSYAIGGA
QGATIISQGNRYKAEHGAAKEVTHRNQAKKEEWIKWTWRSEGDLMLNGAFFVNSGNPNWA
AQYKGYPLLKAEPAHRVHDLTSFAGAALGCRVGLPC
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtggttaaattccaattggtattggtcgtatgttatgttttcgtgatatttgtc
atggccggttccaatgacacgataagcaacaggagggttttaacgaggcataagagacac
aacggaccatgtgtagcccataacttaatcgacaaatgttggcgatgtgaccctaaatgg
gcagacaaccgtcaaaggatagcagattgtgctcaagggtttggtcacaatgccaaaggc
ggaaaaggtggcaaattctacgtcgttactagtgcacaagacaatgacatggtcaaccct
aaaccaggcaccctccggcatgctgttctccaacctggaccgctttggatcatattcaat
cgccacatgaacatcaagctccgacaggagctcatttttactagcgataagactgttgat
ggacgtggatttcacattcacatctttggtggtgctggaattatgttgcaaaacatcaga
aacgtcattattttcaacatccatttgtatgatatcacaccagcaagtggcggcatgatt
agatcaactcctgatcatgttggaatcagaggagcaagcgatggagatgcaatttgtata
ttcggatccacggacatttggatcgatcactgctccttcattggctcatatgatggcctt
attgacattgttgctcgttccacagacatcactgtctctaataaccattttgtcagacac
gataaggctctgctatttggtgcaagtgatgagactccagatgaaaatatgagagttaca
ctcgcttataaccactttggaaaaggacttacacaaagattacctgcagttcgatgggga
tttgttcatgttgtaaacaatgattacacaatgtggaagagctatgcgatcggaggtgca
cagggtgccaccatcattagccaggggaaccgctacaaagcagaacacggtgcagccaag
gaggtgactcacagaaatcaagctaaaaaagaagaatggatcaagtggacatggagatca
gagggagatctgatgctaaatggagcattctttgttaattctggaaacccaaactgggca
gcgcaatataagggttacccattgttaaaagctgaaccagctcatagggttcacgacctg
acaagttttgccggtgctgcccttggatgcagagtaggattaccttgttaa
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