Erigeron canadensis (horseweed): 122580531
Help
Entry
122580531 CDS
T07610
Name
(RefSeq) RING finger protein B-like
KO
K20285
Rab9 effector protein with kelch motifs
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecad04131
]
122580531
Membrane trafficking [BR:
ecad04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
122580531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Kelch_4
Kelch_3
Beta-prop_ATRN-LZTR1
Kelch_5
Kelch_1
Kelch_6
Kelch_2
NANM
WDCP
Motif
Other DBs
NCBI-GeneID:
122580531
NCBI-ProteinID:
XP_043608740
LinkDB
All DBs
Position
8:complement(20188508..20192589)
Genome browser
AA seq
619 aa
AA seq
DB search
MGSLGNGEFKKATMWLYPKFMGFNPSERWGHSACYSNGFLYIFGGCCGGLHFSDVLVLNL
ETMAWTNIATTGAGPGPRDSHSAVIVGHMMIIFGGTNGTKKVNDIHILDLLTREWTRPNC
KGVAPTPRESHTATMISHDRMVIFGGSGEGDANYLNDLHVLDLKTMRWSSPVPKGDIPVP
RDSHIAVFVCNNLFVYGGDCGDRYRGDVDVFNVDTLTWSRFVVQGESPGVRAGHAAVTIG
TKVYMIGGVGDKQYYNDVWILDTITCSWTQLEVHGQQPQGRFSHTAIVTDSDIAIYGGCG
EDERPLNELLILQLGSDHANDRYNNFGCTLLGSQCSKEKRHFLHEHQASMSQSLPFSSDP
MHTKRRRMSSSKACELIESEPEEHSLSLSQHSSPSHSDQERTLVKIPSNSSPQVLPLFKN
QNQNQISSSCKQFQGTLSNDITILSRTSQDPHFVQEQSNHYKNHQNNHASRVDHRNVEPL
RVQNLIGAEVHGKVDGAFDSGYLMTATVNGRIFRGVLFPPGPEVVSRGAIRGHNRRSPTS
HVSQRNLHINRAFIRHSNHAPEASHHHSYIQDRHVRLPSPRVRSIPALSLGREQPKVHNE
LQGVVLTLGGPGSCGHSGS
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgggttctctgggaaatggtgaattcaagaaagcaacaatgtggttgtatccaaagttc
atgggttttaacccttctgaaagatgggggcattctgcttgctactctaatggctttctc
tatatctttggtggatgctgtggtggtctacatttcagtgatgttcttgtgctaaacctc
gaaaccatggcttggaccaatatagcgacaaccggtgcgggccctggtccaagagatagt
cacagcgcagtcatagtaggccacatgatgatcatttttggaggaacaaatggcactaag
aaggtcaacgacattcacattttggatctcttgactcgtgaatggacacgaccgaattgt
aaaggagttgctccaaccccccgagaaagtcacaccgcaaccatgatcagtcacgatcga
atggtaatatttggtggcagtggtgagggtgatgcaaattacttaaatgatttgcatgta
ttggacctcaaaacaatgaggtggagttcgcctgtaccaaaaggtgatattcccgtcccc
agggatagtcacattgcggtttttgtatgcaataatctttttgtctatggtggtgattgt
ggggatcgttaccgtggtgatgttgatgtttttaatgtcgacacattgacttggtcaagg
tttgttgttcaaggagaatcacctggggttcgagcaggacatgctgcggtcactatcggg
acaaaggtatatatgattggcggtgttggtgataaacagtactataatgacgtttggata
cttgatacgatcacttgttcttggactcaactagaggtacacggtcaacagccacaaggg
cgtttttcccacactgcgattgtcacggactctgacattgccatttacggaggatgtggt
gaggatgaacggcctctgaacgaactactgatcttgcagcttggatcagaccatgcaaat
gaccgatacaacaactttgggtgcacactgttaggaagtcaatgcagcaaagaaaaacgg
cacttcttacatgaacatcaagccagcatgagtcagtcgttgccattcagttcagatcca
atgcataccaagagaagacgaatgtcaagttcaaaagcttgtgaattgatagaatcagaa
ccagaagaacattcgctttctctctcacaacattcatctccatcacactctgatcaagaa
agaacacttgtcaagataccttctaactcgtctcctcaagttttgcccttgtttaaaaat
caaaatcaaaatcaaatttcaagtagttgcaaacaatttcagggtaccctatcaaatgat
ataacgattcttagtcgaacttcacaggatccacatttcgttcaagaacaatccaatcac
tataaaaaccatcaaaataaccatgcaagtcgagtggatcacagaaatgttgagccattg
cgtgttcaaaacttgattggggcagaagttcatggcaaggttgatggagctttcgactca
ggttacttgatgactgcaacagtcaatggtcgaatctttagaggagtcttattccctcct
ggtcctgaagttgtttcaagaggagctattcgtggccataatcgcagatctccaacaagc
catgtgtctcaaagaaatctacatataaaccgggctttcattaggcactcaaaccatgca
ccagaagcaagtcatcatcatagctacatacaagatcgtcatgtcagactgccttctccg
agggtcagatcaattccggctctgtcattagggagagaacaacccaaggttcataatgaa
ctgcagggtgtggttttaacactgggcggtccggggagctgtgggcacagtggctcttag
DBGET
integrated database retrieval system
