Erigeron canadensis (horseweed): 122580557
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Entry
122580557 CDS
T07610
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122580557
09122 Translation
03013 Nucleocytoplasmic transport
122580557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122580557
03041 Spliceosome [BR:
ecad03041
]
122580557
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122580557
Spliceosome [BR:
ecad03041
]
Complex C
Other components
EJC/TREX
122580557
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122580557
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
DUF4350_C
LIM_bind
Motif
Other DBs
NCBI-GeneID:
122580557
NCBI-ProteinID:
XP_043608763
LinkDB
All DBs
Position
8:18417387..18435392
Genome browser
AA seq
1782 aa
AA seq
DB search
MSSSGGGGMVECRYITQECIREWKNGNNSFKPPSPPLLLRFQYELSWNIVKGELPINKCK
SALELVDCSDNNDEVASNFADIVSQMALDHTMPGEYRARLIKLAKWMVEHSVVPLRLFHE
RCEEEFLWDSEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQGSE
DRSQNTSAATVGIIKSLIGHFNLDPNRVFDIVLECFELQPDNNAFLNLIPIFPKSNASQI
LGFKFQYYQRMEVHNTVPFGLYQLTAILVKNEFIDLDSIYTHLLPNDDEAIEHYNVFSAK
RLDEANKIGKINLAATGKDLMDDEKQGDVTVDLFAALEMEREAVIERSSELENSQTLGLL
IGFLFVDDWHHANILFRRLSPLNPVEHIQICDGLFRIIEKTISPAYELVRHSPLQATGDS
DFMETDNNLIRRLFIDLPKELFEMLTSVGPYLHRDTLLLQKVCRVLRGYYLSALKSVTSG
DGSNSDTGLSGNRTPRFHLKEARLNLEEAFGACLLPSLQMIPANPAVGQEIWAVLSLLPY
EARYRLYGEWEKDDECSPMVQSAKQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMT
VLRTIVHQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLVQSGREKLKDDGLNLSDW
LQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGSGIELVLLQELIQQMANVQYTENMTE
EQLDAMAGSETLRYQATSFGATRNNKALIKSTNRLRDSLLPKDEPKLAIPLLLLIAQHRS
VVVIEADSPHIKMVCEQLDRCHGSLLQYVEFLCGAMTPIISYAQLVPRLHDLIHLYHLEP
EVAFLIYRPVMRLFRCQSSPDVLWPLDCDELTSSSAAEDSESMDISGKLILDLGPSQKPI
MWSDLLDTVRTVLPSKAWNSLSPDLYATFWGLTLYDLYVPRSRYESEIAKQHAALKALEE
LSDNSNSAITKRKKDKERIQESLDRLTSELRKHEANVASVRRRLAREKDKWLSSCPDTLK
INMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCC
TEYEVGRLGRFLFETLKMAYYWKSDESVYERECGNMPGFAVYYRYPNSQRVTYSQFIKVH
WKWSQRITRLLIHCLESTEYMEIRNALILLTKVSNAFPVTRKSGINLEKRVAKLKSDERE
DLKVLATGVAAALAARKPSWVTEEEFGMGYLDLKSASSTASKSAPSTSGPPSEAVSGRST
SVVHHHDSIREPTVRAKPSESKHEKGKGSSLSNGSDPSLQSGPSKSAESQKQTDDSGSRV
FDENPAKGATLKRSVLAASVSKQAKQDLAKNEPKPKTVGRISSSAAGEQAVALHEPSIKG
PTLLTRSSETDTGMSKMAESRITSIKDESSEAVDVQRRPSSRPSHSPRHDNTSVSKSNDK
AAKRTSPAEEQERFVKRRKGEHDLRDIEPEVRFSDRERSLDPRASEKYYQIEDDPVKSND
KSLDKSKNERYDREYRERFHGDDVTEKSRDRSMERYSRERSVDRTSDKSKDDRNKGRYNE
TSVEKSHVDDRFRGQSLPPPPPLPPHVVPQSLNANRRDEDSDRRVGTSRHSQRLSPKHDD
REHRRSEENMLISQEEAKRRREEEIRERKREEREGFAAKMDDRERDGEREKGNLLKEESD
VNASKRRKLKREHLPLESGEYSPVAPAPPLLNINMTPSYDVRDRGDRKAAVLARPAYVEE
SNRMHGKDVPTKMTRRDSDPMYDREWEDEKRQRVEPKRRHRK
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttctggcggtggcggtatggtggagtgtagatacataacacaagaatgtata
cgtgaatggaagaatggaaacaattcctttaaaccaccttctccccctctccttcttcgt
tttcaatatgaactttcttggaatattgttaaaggagagttaccgattaacaagtgcaaa
tctgcgctcgagttggttgattgttctgataataatgacgaagttgcttctaattttgct
gatattgtttctcaaatggctctagatcatacaatgcccggagagtatcgtgctcgtctg
attaagttggcaaagtggatggtggaacattctgtggttcctttgaggctctttcacgaa
cgatgtgaggaagaattcctatgggattcagagatgattaagataaaggcagctgattta
aagtcaaaagaggtcagggttaacacccgtcttctttaccaacaaacaaaattcaacctc
cttcgagaagaaagtgaaggctatgctaagctggttacccttctctgtcaaggttcggag
gataggtctcaaaatacatcagctgcaacagttggcataatcaagtcattaattggacac
ttcaatttggatccaaaccgtgtctttgacattgtattggaatgttttgaacttcagcct
gataacaatgccttcttgaacctgatacctatatttccaaagtccaatgcttctcaaatt
cttgggttcaagtttcaatattaccagcgtatggaagtgcataatactgtaccttttggg
ctttatcagcttacagcaatactggtcaagaacgaatttattgatcttgatagcatatac
actcatctacttcccaatgatgatgaagccattgagcattataatgtattttcagcaaag
cgacttgatgaggctaataaaattggcaagattaatcttgctgctaccgggaaggatctt
atggatgacgaaaaacaaggagatgtgacagtagatctttttgctgctttagagatggaa
cgcgaagcagttatagaacgctcttcagagcttgaaaacagtcaaactttggggttgctt
attggttttctttttgtggacgactggcatcatgctaatatcctttttcgtcgcctctca
cctctcaatccagttgaacatattcagatatgtgatggactcttcaggattattgagaaa
acaatttctcctgcttatgaacttgtccgtcactcaccgcttcaagctacaggagattcg
gattttatggagacagataataacctcattaggagattgttcattgatctcccaaaagag
ttatttgagatgcttacttctgttggaccctatcttcaccgtgatacattactgctccaa
aaggtgtgcagagtgttgagaggttattacctgtctgcccttaagagtgtcacttctggt
gatggctctaattcggatactggtttgagtggaaatcgaactcctcgcttccacttaaag
gaagccaggttaaatcttgaggaagcctttggtgcatgtttacttccttcactgcaaatg
ataccggcaaatccggctgttggacaggaaatctgggctgtattgagcctccttccatat
gaggcaaggtatcgtctatatggtgaatgggagaaggatgatgagtgcagccccatggtt
caatctgcaaagcagacagcaaagttggacactagaaggatcttgaaacggcttgcaaag
gaaaatctaaagcagcttggaaggatggtagccaaattagctcatgcaaatcccatgacc
gttcttcgaactattgtccaccagatagaggcatacagggatatgattgctcccgttgtt
gatgcatttaaatatctaacacagcttgagtatgatattttggaatatgttgtgatcgaa
cgtctggtacaaagtgggcgtgaaaagttaaaagatgatggtcttaacttatcagactgg
ctgcaatctttggcttcattttggggtcatctgtgtaagaagtacccatcgatggaactc
aggggtctatttcagtatttggtaaatcagttgaaaaaagggagtgggattgagcttgtt
cttctgcaggagcttatccagcaaatggctaatgttcagtacactgagaacatgactgaa
gagcagttagatgctatggctggaagtgagactctacgctatcaggctacctcttttgga
gcaacccgaaacaataaggctttgatcaaatccaccaatagattacgagattcattgctt
ccaaaggatgagccaaaattagcaattccacttttgctactcattgctcagcatcgctct
gtggttgtgatcgaggctgactctcctcacattaagatggtctgtgaacaactggataga
tgtcatggatcccttctgcaatatgtggaattcttatgtggtgccatgacgccaataatc
tcgtatgcgcagcttgttccacgtcttcatgatctcatacacttataccaccttgaacct
gaggttgcatttttaatttatcgacctgtgatgagactctttagatgtcagagttcacct
gatgttctttggcctttagattgtgatgaattgacgagtagttcagctgcagaggacagt
gaatcaatggatatatctggaaaactcatacttgatcttggtccttcccagaaacccata
atgtggtcagatcttcttgatacagttagaacagtgttgccttcaaaagcctggaacagc
ctctctcctgatctatatgccacattttggggtctaacactctatgatctctatgtacct
agaagtcgctacgagtctgaaatagctaaacagcacgctgctcttaaagctttggaagaa
ctttctgataattctaattcggcaattactaaacgtaagaaggataaagaaagaatacaa
gaatctttagatagactaaccagtgaacttcgaaaacatgaagcaaatgttgcgtctgtt
cgtagacgtctggcccgtgagaaagataaatggttgagttcttgccctgatacattgaag
attaacatggagttccttcaacggtgtatatttccacgatgtacattcagcatgccagat
gcagtatattgtgcgatgtttgttcacactcttcactcgctaggcacacctttcttcaac
acagtcaaccatattgatgttctgatttgcaaaactttacaaccaatgatatgttgttgc
accgagtatgaggtgggtcggcttggcagatttctgtttgagacgctcaagatggcttat
tattggaagagtgatgaatcggtatacgaacgcgaatgtggaaacatgcctggatttgct
gtctattatagatatccaaatagccagcgtgtcacatatagccaatttattaaggtacat
tggaaatggagccaaaggattacaagattattgatccactgcttagaatctacggagtac
atggaaattcgcaatgctcttatcttgcttacaaaagtttcaaatgctttccctgttact
aggaaaagtgggatcaaccttgagaaaagggttgctaaacttaaaagtgatgaaagagaa
gatctaaaagtgttagctactggtgttgctgcagccttggctgctcgaaagccttcatgg
gttacagaagaagaatttggaatggggtatcttgatttaaagtctgcatcatcaacagct
tcaaagtctgctccatcaactagtggcccacctagtgaagctgtaagtggaagatctact
tcagtagtacatcatcatgattctattagagagcctacagtgagggcaaaaccttcagaa
agtaaacatgaaaagggaaaaggtagttcactaagtaatggttcagatccttcattacaa
tctggaccatccaaatcagcagaaagtcaaaaacagaccgatgattctggaagtagagtc
ttcgatgagaatcctgcaaaaggtgctacactgaaaaggtcggttcttgctgcatctgta
tcaaagcaagcaaaacaggatcttgcaaaaaacgaacctaaaccaaaaactgttgggaga
atctcatcatctgctgctggtgagcaggctgtggctcttcatgagccttctataaaaggc
cccacactgttgacaaggtcatcagaaacagataccggtatgtcaaaaatggctgaatca
agaatcacttctataaaagatgagtcttctgaagctgttgatgtccaaaggcggccttca
tctcgaccctctcattctccaaggcatgataatacctccgtctcaaaatctaacgataaa
gcagctaagagaacaagcccagctgaggaacaagagcgctttgttaaacgacgaaaaggg
gaacatgatttgagagacatcgagcccgaggttcggttctcggatagagagaggtcctta
gatccccgagcatcagagaagtattaccagattgaagacgatccagtcaaaagtaatgac
aagtcattagataaatcgaaaaatgaaagatacgatagggaataccgagaaagatttcat
ggagatgatgttacagaaaagtcaagggataggtcgatggaaagatacagcagagagcgg
tcagttgataggacttctgataaaagcaaagatgacagaaataaagggcggtacaatgag
acttctgtagagaagtctcatgttgatgaccggtttcgagggcaaagtttgccacctccg
ccacctttaccaccacatgtggttcctcaatccttgaatgcaaatcgaagagatgaagac
tccgatagaagagttggaacaagtagacattcacagcgactgtctccaaagcacgatgac
agagaacatagacgatctgaggagaatatgttaatctctcaagaagaagcaaaacgaaga
agagaagaagaaattcgagaaagaaagcgagaagaacgggaaggatttgcagcaaagatg
gatgacagagaacgagatggagagagggaaaagggtaatcttctgaaagaggagtcggat
gtgaatgcctctaagcgacgaaagctgaaaagagagcatctgccattggagtctggggag
tactcgccagtagctccagcaccgcctctccttaacattaatatgacaccgtcatatgat
gtcagagataggggggaccgaaaagcagctgttcttgcacgccctgcttacgtagaagaa
tctaaccgtatgcatggaaaagatgtacccacgaagatgacacggcgtgattcggaccca
atgtatgacagagaatgggaagacgaaaaacgacagagggtcgaaccaaagcggaggcat
cggaaatag
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integrated database retrieval system
