Erigeron canadensis (horseweed): 122580909
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Entry
122580909 CDS
T07610
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122580909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122580909
03009 Ribosome biogenesis [BR:
ecad03009
]
122580909
04131 Membrane trafficking [BR:
ecad04131
]
122580909
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecad04147
]
122580909
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
122580909
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
122580909
Membrane trafficking [BR:
ecad04131
]
SNARE
SNARE associated proteins
Others
122580909
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122580909
Exosome [BR:
ecad04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122580909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_2
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
ATPase_2
Parvo_NS1
IstB_IS21
ABC_tran
Vps4_C
AAA_7
Viral_helicase1
NB-ARC
AAA_24
TsaE
NACHT
DUF815
Zeta_toxin
AAA_lid_PRS2_C
Zot
Motif
Other DBs
NCBI-GeneID:
122580909
NCBI-ProteinID:
XP_043608990
LinkDB
All DBs
Position
9:complement(30998528..31003282)
Genome browser
AA seq
816 aa
AA seq
DB search
MSNQPESSSSEPKGPPPPAAAGGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVAMHPNT
MEKLQLFRGDTILLKGKKRKDTVCIALADESCDEPKIRMNKVVRTNLRVRLGDVVSVHQC
QDVKYGKRIHVLPLDDTIEGVTGDLFDAYLKPYFLEAYRPVRKGDHFLVRGGMRSVEFKV
IETDPGEYCVVAPDTEIFCEGEPIKRDDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRH
PQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNL
RKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGA
TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVIRIHTKNMKLSDDVDLEKIAKETHGY
VGADLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFQTALGTSNPSALRE
TVVEVPNCSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTL
LAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQR
GSSSGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIP
LPDEDSRHQIFKAAMRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD
IERERKRSENPDSMDEDEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG
FGSEFRFPEAASGQAAAASDPFAASAGGADDDDLYS
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatcagcctgaatcttcctcatcggaaccaaaaggaccgccaccaccggcggcg
gcgggcggcaaaaaggacttttcgacggcgatattagaacggaagaaatcgccaaacaga
ttagtagttgatgaagcagttaacgatgataactcagttgtcgctatgcatcctaatact
atggagaaattgcagctcttccgtggcgatactattcttctaaagggaaagaaaagaaaa
gatacagtctgtatcgcccttgctgatgaaagttgcgatgagcccaagatcagaatgaac
aaggtcgttagaacaaacttgagggttcgactgggagatgttgtttccgtgcatcagtgc
caagatgtgaagtatggaaagcgtatccatgttcttccgctagatgacacgattgaaggt
gtcacaggggacttgtttgatgcatacttgaaaccctacttcctggaagcatataggcca
gtgagaaagggggatcattttctggttagaggaggtatgcgaagtgttgagttcaaggta
atcgagactgacccgggagagtactgtgttgttgctccggacacggaaatcttttgtgag
ggtgagcccattaagagggatgatgaggatcggttggatgagattggttacgatgatgta
ggtggtgtgaggaaacagatggctcagattcgtgagttggtcgaattgcccctaaggcat
cctcaacttttcaaatccattggagttaaacctcccaaaggtattttgctctatggacct
cctggttcgggaaaaacactaatagcaagggctgtagccaatgaaactggagctttcttt
ttctgcattaacgggccagagattatgtcgaaactggctggagagagtgaaagcaatctt
aggaaggcatttgaggaggctgaaaagaatgccccttcgattatatttattgatgagatt
gattcaattgctcctaaaagagaaaaaactaatggtgaagtggaaaggaggattgtttca
caactattgacactaatggatggtttgaaatctcgtgcacatgttattgtaatgggtgct
acaaatcgtccaaacagcattgaccctgctctgagacgttttggccggtttgatagggaa
atagacattggcgtgcctgatgaagtgggacgacttgaggttattcgcatccacaccaag
aacatgaaactttctgatgatgttgatttggaaaagatagctaaagaaacacatggatat
gttggtgctgatcttgctgcactttgcactgaagctgcacttcaatgcattagagaaaag
atggacgtcattgacttggaagacgattctattgatgctgagatactgaattctatggct
gtcacaaatgaacatttccagacagctcttggaaccagcaacccgtctgctttgcgtgag
actgttgtggaggttcccaactgtagctgggatgatattggaggtcttgaaaatgttaag
cgtgaactacaagagactgtccaatatcccgtggagcacccagagaaatttgagaaattt
ggcatgtcaccctcaaaaggagttcttttctatggtcctcctgggtgtggaaagacactt
ctagcaaaggctattgcaaacgaatgtcaagccaacttcattagtatcaagggaccagaa
ttgctcacaatgtggtttggtgagagtgaagccaatgtaagagaaatttttgacaaggcc
cgtgggtctgcaccctgtgtcctcttctttgatgagctggactcaattgcaactcagagg
ggaagtagttctggtgatgcaggtggtgctgctgaccgagttttaaatcagttattgaca
gaaatggatggaatgtctgccaagaagacagtttttataattggagccaccaataggcct
gatatcattgaccctgcactactccgtccagggcgtcttgatcaactcatatatatccca
ctaccagatgaggattctcgtcaccagattttcaaggcggcaatgaggaaatccccagtt
tccaaggatgttgatttgagagctttagcaaaatatacacaaggctttagcggggctgat
attacagagatatgccaacgtgcttgcaagtatgctatcagagagaacattgagaaagac
atagagagggaaagaaagagaagcgagaatccagactctatggacgaagatgaagacgag
gtggcggaaatcaaggcagctcactttgaggaatccatgaagtatgcccgcagaagtgtg
agtgatgccgacattcggaagtatcaagcatttgcccagacactgcagcagtctcgtgga
tttggctcggaattccggttcccagaagctgcatctgggcaagctgccgctgcttctgac
ccatttgccgcatctgccggtggagctgatgatgatgatttatacagctaa
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