Erigeron canadensis (horseweed): 122580929
Help
Entry
122580929 CDS
T07610
Name
(RefSeq) ubiquitin C-terminal hydrolase 12-like isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122580929
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ecad01002
]
122580929
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122580929
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
122580929
Peptidases and inhibitors [BR:
ecad01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
122580929
Ubiquitin system [BR:
ecad04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
122580929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH_2
MATH
UCH_1
RA_2
RA
Malt_amylase_C
SASP
Motif
Other DBs
NCBI-GeneID:
122580929
NCBI-ProteinID:
XP_043609007
LinkDB
All DBs
Position
9:complement(32467743..32482302)
Genome browser
AA seq
1129 aa
AA seq
DB search
MTMITPQPLDQGEEEEMLVPHTELVEGPVALDGTPPVEFPRPMEVDSQAEVVSTAENQVA
DEPQASRFTWKIENFSRQNSKKLYSDVFVVGGYNWRVLIFPKGNNVEHLSMYLDVADSAT
LQYGWSRYAQFSLAVVNQMHTKFTVRKDTQHQFHGRENDWGFTSFMPLSDLYDPSKGYLV
NDTCIIEADVAVRKVIDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYH
MPTTENDMPSGSIPLALQSLFYKLQYNETSVATKELTKSFGWDTYDSFMQHDVQELNRVL
CEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYAS
FDKYVEVERLEGDNKYHAEEHGLQDARKGVLFIDFPPVLQLQLKRFEYDFTRDTMVKIND
RYEFPLELDLDREGGKYLSPDADKSIRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSDQWF
KFDDERVTKEDLKRALEEQYGGEEELPQTNPGYNNTPFKFTKYSNAYMLVYIRESDKEKI
ICDVDEKDVAEHLRLRLKKEQEEKEDKKRYKAQAHLYTIIKVAREVDLLGQIGKDIFFDL
VDHDKVHSFRIQKQLPFNLFKEEVAKELGIPVQFQRYWLWAKRQNHTYRPNRPLTPQEET
QSVGQLREASNKATNAELKLFLEIEIGPDLNPLPPPDKTKDDILLFFKLYDPAKEELCFV
GRSFVKSSGKPIEIIPKLIEMSGFSPDEELELYEEIKFEPSVMCERLDKRASFRSSQIED
GDIICFQKLHQAVAVDKYRYPDLPSFFEYVKNRQVVNFRSLDRPKEDDFCLELSKQHTYD
DVVERVAQKLGLDDPSKIRLTPHNCYSQQPKPHFIKYRAADHLQDMLAHYNQISDILYYE
VLDIPLPELQCLKTLKVVFHHATKEEPVIHHIRLSKQSTVGDVLDELKKKVELSHPDAEL
RLIEVFYHKIYKIFSLNEIIENINDQYWTLRAEEIPEEEKNLGPQDRLIHVYHFIKDTAQ
NQMQVQNFGDPFLLIIHEDETLADVKVRIQKKLQVPDDEFSKWKFAFLSLGRPEYLQDTD
VVSSRFQRKDVYGAWEHYLGLEHPDTSPKRPYTANQNRHTYEKAVKIYN
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgattactcctcaaccgctggatcaaggggaagaagaagaaatgcttgttcca
cacactgagctagtggaaggccctgttgctttggatggtactccacctgttgaattccca
cggcctatggaagtcgattctcaagcagaagttgttagcacggccgagaatcaagtagct
gatgaaccacaggcaagcaggtttacttggaaaattgagaatttctcccgtcagaacagc
aagaagctttattctgatgtgtttgtggttgggggatataattggcgtgtgcttatattt
ccgaagggaaacaatgtggaacatttgtccatgtacctagatgtggctgattcagcgacc
ttgcagtatggttggagtagatatgcacagttcagcttggctgtggttaatcagatgcac
accaagttcacagtaagaaaagacacgcagcaccagttccatggaagggaaaacgattgg
ggcttcacctctttcatgcctctaagtgatctatatgaccccagtaaaggttatcttgtg
aatgacacatgtattattgaagctgatgttgctgtacgtaaagtgattgattattggtca
tatgactcaaagaaggagactggctatgttggacttaagaatcaaggagcaacatgctac
atgaactctctccttcaaacattgtaccatattccttattttagaaaggctgtgtatcat
atgccgacaacagaaaatgacatgccatcagggagcattcctctcgctcttcaaagctta
ttctataaacttcagtacaatgaaacaagcgttgcaacaaaagaattgacgaaatctttt
gggtgggatacatatgattctttcatgcaacatgatgttcaagaacttaatcgggtcttg
tgtgaaaagcttgaagataaaatgaaggggacagttgtggaaggtacaatacagaagtta
tttgaaggacatcatatgaattacattgaatgcattaatgtggacttcaagtcaactaga
aaagaatcattttatgatcttcaacttgatgtgaaaggctgtaaagatgtttatgcttct
ttcgacaaatatgttgaagtggaacgtcttgagggtgacaataaataccatgctgaagaa
catggtttgcaggatgctaggaagggggtattgtttattgactttccgcctgttcttcaa
cttcagctaaagcgatttgaatatgatttcacaagggatacaatggtgaagataaatgat
cgttatgaatttccactagagcttgatcttgatagggaaggtggcaagtatctatctcct
gacgctgataagagtatccgcaacctttatacccttcacagtgtattggtgcatagtggt
ggtgtgcatggcggtcactattatgcatacatcaggcctaccttatcagatcaatggttc
aagttcgatgatgaaagggtaacaaaagaagatttgaagagggcattagaagagcaatat
gggggcgaggaggagcttccacaaacaaatcctggctacaataacactccgtttaaattt
acaaagtactcaaatgcatacatgcttgtgtacatacgtgagagtgacaaagaaaagata
atctgtgatgtggatgagaaagatgtcgcggaacaccttaggttgagattgaagaaagag
caagaagaaaaggaagacaagaaaagatacaaagcacaggctcatctctacactatcata
aaggttgctcgtgaagttgatctgttaggacagataggaaaagatatattttttgatctc
gttgaccatgacaaagttcacagttttcgtatccagaaacagttgccatttaacctattc
aaggaggaggtggccaaagaacttggcatacctgttcaattccaacgttactggttatgg
gcaaaaaggcagaaccatacataccgtcccaatcggcctttgacaccgcaggaggaaaca
caatctgttggacagttaagggaggcttccaataaagctaccaatgctgaactgaagttg
ttcttggagatagaaattggaccggatttgaacccccttccgccacctgacaaaaccaaa
gatgatatacttcttttcttcaagctttatgaccctgcaaaggaagaactttgttttgtt
ggtaggtcttttgtgaagagttctggtaagccgattgaaatcataccaaagctgattgaa
atgtctggctttagtcctgatgaagaacttgaactttacgaggaaataaaatttgagcca
tctgtcatgtgtgagcgtcttgataagcgtgcttcattcagatctagtcagattgaggat
ggggacatcatttgcttccagaaactccatcaggctgttgctgtggataaataccgatat
cccgatcttccttcattttttgaatatgttaaaaatcgccaggtagttaatttccgatct
ctggacagacctaaagaggacgatttctgtcttgaattgtcaaagcaacatacatatgat
gatgtagtggagagagtggctcagaaacttggtctagatgatccatccaaaatcagactt
actcctcacaactgttactctcaacaacccaagccccacttcattaaatacagagctgca
gatcatttgcaagacatgctagctcattacaatcagatatcagatattctgtactatgaa
gtgttggacatccctctcccagagttgcagtgtctgaaaactctgaaggttgtttttcat
catgctacaaaggaagagcctgttattcaccacatcaggttgtcgaaacagagcactgtt
ggagatgttctcgatgaattaaagaaaaaggtggaattgtcacatccagatgctgaactg
agactgattgaagtattttatcataaaatatacaagatattttcactgaatgagataatc
gagaatataaatgatcaatactggacattacgtgcggaggaaattccggaagaagagaaa
aatctgggaccccaagatcggttaattcatgtttaccatttcattaaagatactgcacag
aatcagatgcaagtgcaaaactttggagaccctttccttcttataattcacgaagacgaa
actttggcagatgtgaaagttcggattcaaaagaaattacaagttcccgatgatgagttt
tctaagtggaagtttgcatttttatctcttggacgacccgagtatcttcaagacaccgac
gtcgtgtctagtcgttttcagagaaaagatgtttatggtgcttgggagcattaccttggg
ttggaacacccggatacttcccctaagaggccatacaccgctaaccagaaccgtcacaca
tatgagaaggcggttaaaatatataactag
DBGET
integrated database retrieval system
