Erigeron canadensis (horseweed): 122580999
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Entry
122580999 CDS
T07610
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122580999
09123 Folding, sorting and degradation
03018 RNA degradation
122580999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122580999
03041 Spliceosome [BR:
ecad03041
]
122580999
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122580999
mRNA degradation factors
5'-3' decay
Lsm complex
122580999
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122580999
Complex C
U2 snRNP components
122580999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
LSM14
Motif
Other DBs
NCBI-GeneID:
122580999
NCBI-ProteinID:
XP_043609078
LinkDB
All DBs
Position
9:8079984..8083006
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKFPHMMSVRNC
FIRGSVVRYVQLPPEGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttttttcatactttaaggatctggtgggaagagaagtgacagtagagctgaaa
aacgatttagcaataagaggaactctccattctgtggatcaatatctcaatatcaaactt
gaaaacactcgcgttgttgatcaagataagttccctcacatgatgtcagtgaggaactgc
tttatcagaggatcagtagtcaggtatgtgcaattgccccccgagggggtggacattgag
ctgctccacgatgccaccagaagagaagcccggggtggttag
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