KEGG   Erigeron canadensis (horseweed): 122580999
Entry
122580999         CDS       T07610                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03018  RNA degradation
ecad03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122580999
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122580999
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122580999
   03041 Spliceosome [BR:ecad03041]
    122580999
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122580999
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     122580999
Spliceosome [BR:ecad03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    122580999
 Complex C
  U2 snRNP components
    122580999
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C LSM14
Other DBs
NCBI-GeneID: 122580999
NCBI-ProteinID: XP_043609078
LinkDB
Position
9:8079984..8083006
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKFPHMMSVRNC
FIRGSVVRYVQLPPEGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttttcatactttaaggatctggtgggaagagaagtgacagtagagctgaaa
aacgatttagcaataagaggaactctccattctgtggatcaatatctcaatatcaaactt
gaaaacactcgcgttgttgatcaagataagttccctcacatgatgtcagtgaggaactgc
tttatcagaggatcagtagtcaggtatgtgcaattgccccccgagggggtggacattgag
ctgctccacgatgccaccagaagagaagcccggggtggttag

DBGET integrated database retrieval system