Erigeron canadensis (horseweed): 122581062
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Entry
122581062 CDS
T07610
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122581062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122581062
03009 Ribosome biogenesis [BR:
ecad03009
]
122581062
04131 Membrane trafficking [BR:
ecad04131
]
122581062
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecad04147
]
122581062
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
122581062
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
122581062
Membrane trafficking [BR:
ecad04131
]
SNARE
SNARE associated proteins
Others
122581062
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122581062
Exosome [BR:
ecad04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122581062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_2
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
ATPase_2
Parvo_NS1
IstB_IS21
ABC_tran
Vps4_C
AAA_7
NB-ARC
Viral_helicase1
AAA_24
DUF815
TsaE
NACHT
AAA_lid_PRS2_C
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
122581062
NCBI-ProteinID:
XP_043609138
LinkDB
All DBs
Position
9:complement(31013277..31019436)
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AA seq
816 aa
AA seq
DB search
MSNQPESSSSEPKGPPPPPAGGKKDYSTAILERKKSPNRLVVDEAVNDDNSVVAMHPNTM
EKLQLFRGDTILLKGKKRKDTVCIALADETCDEPKIRMNKVVRTNLRVRLGDVVSVHQCQ
DVKYGKRIHVLPLDDTIEGVTGDLFDAYLKPYFLEAYRPVRKGDHFLVRGGMRSVEFKVI
ETDPGEYCVVAPDTEIFCEGEPIKRDDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHP
QLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLR
KAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGAT
NRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVIRIHTKNMKLSDDVDLEKIAKETHGYV
GADLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFQTALGTSNPSALRET
VVEVPNCSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL
AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRG
SSSGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL
PDEDSRYQIFKAAMRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI
ERERKRSENPDSMDEDEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGF
GSEFRFPEASSGPAATAASDPFAASAGGADDDDLYS
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatcagcctgaatcttcatcatcggaaccaaaaggaccaccgccgccgccggcg
ggcgggaaaaaagactattcgacggcgatattagaacggaaaaaatctccgaacagatta
gtagttgatgaagcagttaacgatgataactcagttgtcgctatgcatcctaatactatg
gagaaattgcagctctttcgtggcgatactattctccttaagggaaagaaaagaaaagat
acagtctgtattgcccttgctgacgaaacttgcgatgagcctaagatcagaatgaacaag
gtcgttcgaacaaacttgagggttcgcctgggagatgttgtttccgtgcatcagtgccaa
gatgtgaagtatgggaagcgtatccatgttcttccgctagatgatacgattgaaggtgtc
acaggggacttgtttgatgcgtacttgaaaccctactttttggaagcatataggccagta
agaaagggggatcattttctggtcagaggaggtatgcgaagtgttgagttcaaggtaatt
gagactgacccgggggagtactgtgttgttgctccggacaccgaaatcttttgtgagggt
gagcccattaagagggatgatgaggatcgattggatgagattggttatgatgatgtaggt
ggtgtgaggaagcagatggcacagattcgtgaattggtcgaattgcctctaaggcatcct
caacttttcaaatccattggagttaaaccacctaaaggtattttgctatatgggcctcct
ggttccggaaagacactcatagcaagggccgtagccaatgagactggagctttctttttc
tgcatcaatggaccggaaattatgtctaaactagctggagagagtgaaagcaatcttagg
aaggcattcgaggaggctgaaaagaatgctccttcaattatatttattgatgagattgat
tcaattgctcctaaaagagaaaagactaatggtgaagttgaaaggaggattgtttcacag
ctattaacacttatggatggattgaaatctcgtgcacatgttattgtaatgggagctaca
aatcgcccaaacagcattgaccctgctctgagacgttttggcaggtttgatagggaaata
gacataggtgtgcctgatgaagttggacgtcttgaggttattcgtattcacaccaagaac
atgaaactttccgatgatgttgatttggaaaagatagctaaagaaacacacggttatgtt
ggtgctgatcttgctgctctttgcactgaagctgcacttcaatgcatcagagaaaagatg
gacgtgatcgacttggaagacgattctattgatgctgagatactgaattctatggctgtc
acaaatgaacatttccagactgctcttggaaccagcaatccatctgctttgcgtgagact
gttgtggaggttcccaactgtagctgggatgatattggaggtcttgaaaatgttaagcgt
gaactacaagagactgtccaatatcccgtggagcacccagagaaatttgagaaatttggc
atgtcaccctcaaaaggagttcttttctatggtcctcctgggtgtggaaagacacttcta
gcaaaggctattgcaaacgagtgtcaagccaacttcattagtatcaagggaccagaattg
ctcaccatgtggtttggtgagagtgaagccaacgtaagagaaatttttgacaaggcccgt
gggtctgcaccatgtgtcctcttctttgatgagctggactcaattgcaactcagagggga
agtagttctggtgatgcaggtggtgctgctgatcgagttttaaatcagttattgacagaa
atggatggaatgtctgccaagaagacagtttttataattggagccaccaataggcctgat
atcattgaccctgcactactccgtccagggcgtcttgatcaactcatatatatcccactg
ccagatgaggattctcgctaccagattttcaaggcggcaatgaggaagtccccagtttcc
aaggatgttgatttgagagctctggcaaaatatacacaaggctttagcggggctgatata
acagagatatgccaacgtgcgtgcaaatatgctatcagagaaaacattgagaaagacata
gaaagggaaagaaagagaagtgagaatcccgactctatggatgaggatgaagacgaggtg
gcggaaatcaaggcggctcactttgaggaatccatgaagtatgcccgtagaagtgtgagt
gatgccgacattcggaagtatcaagcatttgctcagacattgcagcagtcccgtggattt
ggttcggaattccggttccctgaagcttcatctgggccagcagctactgctgcttctgac
ccatttgctgcatctgccggtggagctgatgatgacgacttatacagctaa
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