Erigeron canadensis (horseweed): 122581073
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Entry
122581073 CDS
T07610
Name
(RefSeq) DNA mismatch repair protein PMS1
KO
K10858
DNA mismatch repair protein PMS2
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03430
Mismatch repair
ecad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122581073
03460 Fanconi anemia pathway
122581073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122581073
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
122581073
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
122581073
NCBI-ProteinID:
XP_043609151
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Position
9:8938219..8944837
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AA seq
936 aa
AA seq
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MESSRSVRSPPPASIIIKPINKNAIHRICSGQVILDLPSAVKELVENSLDAGASSIEIGL
KEYGQESFQVVDNGCGISPNNFKVLALKHHTSKLTDFPDLQSLTTFGFRGEALSALCNLG
DLTVETRTKNEKVATHLTFDRSGVLTDEKKTARQVGTTVTVKNLFSNLPVRCKEFHRNIR
KEYGKLISLLNAYALTAKGVRLVCTNTTGRTKNTVVIKTQGSGSLKDNIITVFGTNTFNC
LESVSLFISDTCQVDGFLSKPGNGSGRHLGDRQYFFVNGRPVDMPKVSKLVNELYRSANS
KQYPIAIMNFVVPTNVCDVNVTPDKRKVFFSDEGLLLKSLKEALLKIYSPNLASFTVQQS
EEISQEMNTKLCSPRDKSFSEVSQKQVSPEKSASKKEACSEKQLKETISVVSEGEETPRS
SPAVNVINVEDYSLSKRDFTLRSHGMRKADTFSGNFSKKQAVISNDTTYNRQMSSYSSTM
HKIVAEGTDSPCSSGPIQSRLTSFVTVNKRKLESITNNSSEVPVLRNGPILRQSVKQNSS
FPSTFSKNPMKLHVVDDSDEVDRNESKPSVGTMKDEDYMELDVSPNKVNTKFGQVDKDII
TVETPSLAPKPVLDASSPKNINDAPDVVDMSTPLHSSQPASDTLESSSGPKRCYTMKFSF
EGLKKWRHQKILAFQASKNKSEVSKHKRSYADATLEISQVVKEDAKARALSAATRELEKL
FKKEDFGRMKIIGQFNLGFIIGKLDQDLFIVDQHAADEKYNYEHLSQSTILNQQPLLRPI
VVELSPEEEVVVSMHMNTIRKNGFSLEENVDAPPGNRYRLKAVPFSKNITFGVTDVKELI
SILTDSQGECSMMGTYKMDTSDSVCPPRVRAMLASRACRSSVMIGDPLGKNEMQRIVERL
MDLRSPWNCPHGRPTMRHLVDLTTVHKSSDVDDSTL
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcagcaggtcagtgagatcaccaccgcctgcatcaattattataaaaccgata
aacaagaatgctattcatagaatctgttcaggtcaagtgattttggacctcccttctgct
gttaaggagttagttgagaacagcttggatgccggtgcttccagtatcgaaatcggcttg
aaagaatacggccaggaatcgtttcaagttgtcgataacggttgcggcatttccccaaac
aacttcaaggttttagcgcttaagcatcatacgtcaaaactaacggatttccctgacctt
caatcgttgacgactttcgggtttagaggtgaagctcttagtgctttgtgtaacttggga
gatttgacagttgaaacgagaacgaagaatgaaaaagttgcgacgcatttgacttttgac
cggtcgggtgtgcttactgatgagaaaaagacggcacgacaagttggtacaactgttact
gtgaagaatttgttttctaacttgcctgtgagatgtaaagagttccaccgtaacattcgg
aaagagtatggcaagttgatctctttactcaatgcctatgctctgactgcaaaaggggtt
cggctggtttgtacaaatacgactggaagaactaaaaacactgtagtgattaaaacacag
ggaagtggttccctcaaagataacatcattacagtgtttggcacaaacacttttaactgc
ttagaatccgtgagtctatttatttcagatacttgccaggtggatgggtttctttctaag
cctggcaacggcagtggacggcatttaggtgatcgacagtatttttttgtaaatggtcga
ccagttgacatgccaaaggtcagtaagcttgtgaatgaactttacagatctgcaaattca
aagcaatatccaatcgcaatcatgaattttgttgttccaaccaatgtgtgtgatgttaat
gtgactccggataaaagaaaagtcttcttctctgatgaaggcttgcttctgaagtcattg
aaggaagctttattaaagatctattccccaaatcttgctagcttcacagtacaacaatct
gaggaaatcagccaggaaatgaacaccaagttgtgttcaccacgtgacaagtctttttca
gaggtttcacagaaacaagtatcacctgagaaaagtgctagtaaaaaagaagcatgcagt
gagaagcaacttaaagaaacaatcagtgttgtaagtgaaggtgaagagacaccaagatcc
tcccctgctgttaatgtgatcaatgttgaagattacagtttatcaaagagagattttaca
cttagatctcatggcatgaggaaagcagataccttttctgggaactttagtaagaagcaa
gcagttataagtaacgacactacttacaatcggcagatgtcatcatacagctcaacaatg
cacaaaattgttgccgaaggaacagattcgccttgttcttcaggtcccattcagtcaagg
cttacatcatttgttaccgtaaacaagaggaagcttgaaagtatcactaataattcatct
gaggtgccggtccttagaaatggacccatccttcgtcaatcagttaagcaaaattctagt
tttccttctacattttcaaagaatccaatgaagcttcatgtggttgatgattctgatgaa
gttgataggaatgagtcaaagccatccgttggtaccatgaaggatgaagactacatggaa
ttagatgtctcacctaataaagtcaatacaaaatttggacaagttgacaaggacataata
acagtagagacaccttcacttgctccaaaaccagtattagatgcttcatctcctaaaaat
atcaatgatgccccagatgtagtagacatgtctactccattacattcttctcagccagct
tcagatacactagagtcttcttctggtccaaagaggtgttataccatgaagttcagtttt
gagggactaaagaagtggaggcaccaaaaaatattagcatttcaagcaagcaaaaataaa
tctgaagtatcaaagcacaaaagaagctatgccgatgcaacattagagatttcacaagtg
gtaaaagaagatgccaaggcacgagctttgtctgcagcaacaagggaattggaaaagcta
ttcaagaaggaagattttggccgcatgaagattattgggcaattcaatcttggatttatc
attggcaagttggatcaagacctctttatagtggatcagcatgctgcggatgagaaatac
aattatgagcatttatcacagtcaaccatcttgaatcaacaacctttgctgagaccaata
gtggtggagttatcccctgaagaggaagtggtggtctcgatgcacatgaatactatcagg
aaaaatgggttttcattggaagagaatgtggatgctccccctgggaaccgttatagatta
aaagccgttcccttcagtaagaacataacctttggagttacagatgtgaaggagctcata
tctattttgactgatagtcaaggagaatgctcaatgatgggtacttataagatggacacc
tccgattcagtttgccccccaagagtacgtgcaatgttggcatcacgtgcctgcagatcg
tctgttatgattggagatccacttggaaaaaatgagatgcaaaggatagttgagagattg
atggatctaagatctccatggaattgtccacatggtagaccgacaatgcgtcacttagtg
gatttaacaactgtgcataaaagttccgatgtagatgattcaaccttgtga
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