Erigeron canadensis (horseweed): 122581151
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Entry
122581151 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
ecad03015
mRNA surveillance pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122581151
09122 Translation
03013 Nucleocytoplasmic transport
122581151
03015 mRNA surveillance pathway
122581151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122581151
03041 Spliceosome [BR:
ecad03041
]
122581151
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122581151
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122581151
Spliceosome [BR:
ecad03041
]
Complex C
Other components
EJC/TREX
122581151
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122581151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
122581151
NCBI-ProteinID:
XP_043609251
LinkDB
All DBs
Position
9:37520129..37524619
Genome browser
AA seq
430 aa
AA seq
DB search
MGDTEIKDNEYEEELLDYEEEDDKAPDSAAAVKANGESVKKGYVGIHSSGFRDFLLKPEL
LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVGGQVAA
LVLCHTRELAYQICHEFERFSTYLTDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRV
LALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS
VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKNFKEGHKRILVATDLVGRGIDIERV
NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTSDSDVLNQVQARFEVDIKELPE
QIDTSTYMPS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgggagatacagagattaaggacaatgaatacgaagaggagcttcttgactacgaggaa
gaagacgacaaagcacctgattccgccgccgccgttaaagccaacggtgaatccgttaaa
aagggatatgttggaattcatagctctggatttagagattttctcttgaagccagagctc
ctccgggccattgttgattctggttttgagcatccgtctgaagttcaacatgagtgtatc
cctcaagctattctgggtatggatgtcatctgccaagcaaagtccggtatgggaaaaact
gctgtttttgttttgtcgacgttgcagcagattgaacctgtaggtggtcaagttgctgcc
cttgttttatgtcacactcgggaattggcttatcagatctgccacgagtttgaacgcttc
agcacttacttgactgatatcaaggttgcggtcttttatggtggtgttaacatcaaagtt
cacaaggatcttttgaaaaatgagtgtcctcatattgtcgttggaacacctgggagggtt
cttgcacttgccagagataaagacctagcattaaagaatgttaggcacttcatacttgat
gaatgtgacaagatgctcgagtctctcgacatgaggagagatgtgcaagaaatattcaag
atgacccctcatgataaacaagtaatgatgttttctgcaactctgagcaaggaaattcgg
cccgtgtgcaagaagtttatgcaagatccaatggaaatctatgtggatgatgaagccaag
ctgacattacatggtcttgtacagcactacatcaaattgagcgagctagagaaaaaccgt
aaactgaatgacctgctcgatgcattagatttcaatcaagttgtgatatttgtcaaaagt
gtaagtagagctgcagagttgaacaagttacttgttgagtgtaattttccatccatctgc
atacactctggcatgtcccaagaagaaaggttgacgcgatataagaatttcaaggaagga
cacaagaggattctcgtggcaactgatttagttggtaggggtattgatattgaacgtgtt
aatatcgtcatcaactatgacatgccagattctgctgacacatatcttcatcgggtcggt
agagccggaaggtttgggaccaagggtcttgctattacatttgtatcatctacatctgac
tcagatgttctaaatcaggttcaagcaaggtttgaagttgatataaaagaacttccagag
cagatcgatacgtcaacatacatgccttcatag
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