Erigeron canadensis (horseweed): 122581216
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Entry
122581216 CDS
T07610
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122581216
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122581216
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122581216
NCBI-ProteinID:
XP_043609324
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Position
9:complement(28356753..28362509)
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AA seq
448 aa
AA seq
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MDTPTKCLPVFSFMFLVLFLVTADDVINHNSSNTSRNVETEEMNNQGFYNSSMEERIKEI
EALNENAVQDPEEVVSHLEMSMTNNTERRKLGYFSCGTGNPIDDCWRCDPNWHRNRKRLA
DCGIGFGRNAIGGREGRFYVVTDSRDDDPVNPRPGTLRHAVIQTAPLWIVFKRDMVIQLK
QELIMNSFKTIDARGANVHIANGGCITLQFITNVIIHGLHIHDCKPTGNALVRSSPSHYG
WRTMADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMAHHNEVMLLGH
SDSYFRDKMMQVTIAYNHFGKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINS
QGNRYLAPANPFAKEVTKRVDTAANKWHGWNWRSEGDLLLNGAYFTPSGAGASASYARAS
SLGAKSSSMVATITSNAGVLSCRRGRQC
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggatacacctacaaaatgtctgcctgttttttccttcatgtttcttgttctgtttctt
gtaactgctgatgacgtcatcaaccacaacagctccaataccagcaggaatgtggaaaca
gaggaaatgaacaaccaggggttctacaattcatcaatggaagaaagaattaaggagatt
gaagctttgaatgaaaatgcggttcaagatcctgaagaagttgtttcccatcttgaaatg
agcatgacaaacaatactgaaaggcggaaactaggatacttttcatgtgggaccggtaat
ccaattgatgactgctggaggtgtgacccaaactggcaccgtaaccgcaagcgtcttgct
gactgtggcattggttttgggcgtaatgccattggaggccgtgaaggtcgtttttatgtg
gtcactgattcacgagacgatgacccagtgaacccacgacctggaactctaagacatgct
gtcatacaaactgctccactatggatcgtattcaaacgtgacatggtgatccagttgaag
caagaacttattatgaacagttttaaaacgattgatgcccggggagccaatgtccacata
gctaatgggggttgtataactcttcagttcattactaatgttatcattcatgggttgcac
attcatgactgcaaaccaactggtaatgccttggtcagaagctctccttcccattacggt
tggaggactatggctgacggtgatgctatttccatctttgggtcaagccatatttggatt
gatcacaactctctttctcactgtgccgatggactagttgatgctgtcatgggctctact
gccatcaccatttccaataaccacatggctcaccacaatgaggtgatgttgttgggccat
agtgactcttattttagagacaagatgatgcaagtgactattgcatataatcactttgga
aaaggtctgattcagagaatgccaagatgcagacatgggtatttccatgtagtgaacaat
gactacactcactgggagatgtatgctattggtggaagtgcaagccccaccatcaacagc
caaggcaatagatatcttgcccctgccaatccttttgcaaaagaggttacaaagcgggtc
gacacggctgcaaataaatggcatggatggaactggagatcggaaggtgacctacttctt
aatggcgcttattttaccccatctggtgctggagcctcggcaagctatgctagagcgtca
agtttaggtgctaaatcgtctagcatggttgctacaataacttccaatgctggtgttctt
agctgtcgcaggggtcgccaatgctag
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