Erigeron canadensis (horseweed): 122581249
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Entry
122581249 CDS
T07610
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122581249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122581249
03036 Chromosome and associated proteins [BR:
ecad03036
]
122581249
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122581249
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
122581249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40
Beta-prop_EIPR1
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_WDR41
EIF3I
MIOS_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
122581249
NCBI-ProteinID:
XP_043609367
LinkDB
All DBs
Position
9:11662017..11663272
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AA seq
338 aa
AA seq
DB search
MDNTSTTLESQIHSDQTNPNSITYSSPFTLYSMAISSSSQSHRLAIGSFIEEYSNKINIL
DFNPQTLSIKPTPISFTHPYPPTKLMFQPNPNSKQLLASSGDFLRLYSLQETSSELLSVF
NNSKSSEYCAPLTSFDWNELEPRRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVNDIAW
GEAGVFASVSADGSVRVFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN
KIVILDIRSPTLPVAELERHRGSVNAISWAPTSSQHICSAGDDAQALIWELPTVAGPNGI
DPMSMYLAGAEINQLQWSAAMPDWIAIAFENKLQLLKV
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggacaacacatcaacaactctggaatcccaaatccattccgaccaaaccaacccaaat
tcaatcacatactcatcaccattcactctctactccatggccatttcttcctcctcccaa
tctcaccgtctcgcaatcggaagcttcatcgaagaatattccaacaaaatcaacattctt
gacttcaacccacaaacactttccatcaaaccaacccccatttccttcacccacccatac
ccaccaaccaaactcatgttccaaccaaacccaaattcgaaacagcttctcgcgtcgtct
ggcgacttcttacgtctctacagcctccaagaaacgtcaagtgagttgctttctgtgttt
aataatagtaaaagtagtgaatattgtgcccctttgacttcttttgactggaatgagtta
gaacctaggagaattggcacttctagtatagatactacttgtacgatttgggatatcgaa
aaaggggttgtggagacacaattaattgcccatgataaagaagttaatgatattgcttgg
ggtgaagcaggggtgtttgcttctgtttctgcagatgggtcagttagagtttttgattta
cgagataaagaacattcgacgattatttatgaaagtcctcaacccgatacgcctttattg
agattggcgtggaataaacaggatttgagatacatggcgactattttgatggatagtaat
aagattgtgatccttgatattaggtcgcctacattgcctgtagcggaattggagagacat
agaggtagtgttaacgcgatttcttgggctcctacgagctctcagcatatttgttctgct
ggagatgatgcgcaggcgcttatttgggagttgccgactgtggctggaccaaatggcatt
gatcctatgtctatgtatttggctggggccgagattaatcagctccagtggtctgctgct
atgcctgattggattgctattgccttcgagaacaaactgcagcttctgaaagtttga
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