Erigeron canadensis (horseweed): 122581608
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Entry
122581608 CDS
T07610
Name
(RefSeq) transport inhibitor response 1-like protein Os04g0395600
KO
K14485
transport inhibitor response 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122581608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122581608
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122581608
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_4
LRR_At5g56370
LRR_6
F-box-like
F-box
LRR_8
Motif
Other DBs
NCBI-GeneID:
122581608
NCBI-ProteinID:
XP_043609786
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Position
9:complement(12534761..12542567)
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AA seq
580 aa
AA seq
DB search
MDLGSEKQTKMDPGETSPFPDEVLEPVLSLINSHKDRSSVSLVCKDWYNAERWSRRHVFI
GNCYSVSPEIVAGRFPGIRSVTLKGKPRFSDFNLVPEDWGADVHPWLVVLAKAYPFLEEL
RLKRMSVSDESLEFLGRNFKEFKALSLLSCDGFSTDGLKAIATHCRNLTELDIQENGIDD
LGGEWLSCFPESLTSLEVLNFASLNSEVSFDALEKLVSRCKSLRILKVNRNINLDQLQKL
LLRAPQLTELGTGTFMQDHVTRSVTDLENTFSNCRNLLTLSGLWDANSIYLPVIYPACAS
LTFLNLSYATLRSAELATLLTHCKSLKRLWVLDTVGDTGLEAVGSSCPLLEELRVFPADP
FDQEVAGVTESGFISVSRGCPKLHYVLYFCHQMTNVAVATIAQNCPDFTHFRLCIMNPGQ
PDYLTNEPMDEAFGAVVRTCPKLQRLAVSGLLTDLTFEYIGKYAKNLETLSVAFAGSSDL
GLKYVLGGCPKLRKLEIRDCPFGNAALLSGLTKYESMRSLWMSACNLTMNGCRVLAKEMP
RLNVEVMKDEDSEDSQAHKVYVYRTVAGPRRDAPPFVLTL
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggatctgggttctgaaaaacaaaccaaaatggatccgggcgaaacaagcccatttcca
gatgaagtgttggaaccagtactttcattaataaattcacataaagaccgtagctctgtt
tcattagtttgtaaggactggtacaacgccgaaagatggagtcggcgacatgtttttata
ggaaactgttattcggtttcacccgagattgtagcaggcaggtttcctgggattaggagt
gttaccttaaaagggaaaccgaggttttcggattttaatttggttcctgaggattgggga
gcagatgttcatccatggttggttgttttagcgaaagcgtatccgtttttagaggaattg
agattgaaacggatgtcggttagtgacgaaagtttggagtttttagggaggaattttaag
gagtttaaagcgttgtcgcttttaagttgtgatgggtttagtactgatgggttgaaagct
attgctactcattgcaggaacttaacggagctagatatacaagagaatgggatcgatgat
cttggcggggagtggttaagctgctttcctgaaagcttgacctcgctagaagtgctcaat
tttgcgagcttaaacagtgaagtcagctttgatgcccttgagaagctagtttctaggtgc
aaatctttaaggattttaaaagtcaaccgaaacattaatttagatcaactgcaaaagctt
cttttacgggccccgcagctgactgaacttggtactggaactttcatgcaagatcatgtt
acccgttcagttactgacctagaaaacactttcagtaattgtagaaatctacttactctc
tcgggtttatgggatgctaattcaatttatctacctgttatctatcctgcctgtgcaagt
ctcacattcttaaatctgagttatgcaactttacgcagtgctgagctcgcaacgcttctc
actcactgcaaaagtctaaaacgcctctgggttcttgatactgtaggtgacacgggttta
gaagccgttgggtcctcgtgcccacttcttgaagaacttcgagtcttccccgctgacccc
tttgaccaagaagtcgctggcgtgactgaatcaggtttcatttctgtctcgcgtggctgc
ccgaaactgcattatgtactctacttttgtcaccaaatgacaaacgttgctgtagctaca
attgcacaaaactgcccggatttcacccactttcgcctctgtatcatgaaccctggtcaa
ccggattacctgaccaacgaacccatggatgaggctttcggtgctgtcgtgaggacctgc
ccgaaacttcaaaggcttgcggtctcaggccttttgacggatctgacctttgagtacatc
ggtaaatatgcaaagaacctggaaacactttctgttgcttttgcaggcagtagtgatttg
ggattgaagtatgtactcggaggctgcccaaaactaaggaaactcgagatacgtgactgc
ccgtttggaaatgctgcattgctttcgggtttgaccaaatacgaatcaatgaggtctctt
tggatgtccgcttgtaatttgactatgaatgggtgtagagtgttggctaaagagatgcct
aggttgaatgttgaagtgatgaaagatgaagatagtgaggatagccaggctcataaggtt
tatgtctatagaactgtggctggaccacgaagggatgcaccaccattcgttctgaccctc
taa
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