Erigeron canadensis (horseweed): 122581791
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Entry
122581791 CDS
T07610
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122581791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122581791
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122581791
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
F-box-like
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
122581791
NCBI-ProteinID:
XP_043610005
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Position
9:8591084..8595120
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AA seq
580 aa
AA seq
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MVCRFPEEVLEHVFLFITSHHDRNVVSLVCKSWYDIERYCRRTIFIGNCYAVNPKMMIRR
FPEVRSLELKGKPHFADFNLVPDGWGGYFHPWISEMSRAYPRLEEIKLKRMVVTDDCLEL
IAKSFKNFKVLVLSSCEGFSTDGLAAIAANCRNLRALDLRECEVDDQSGHWLSHFPDSCT
SLESLNMSCLGSDVSFSALQRLIARSPNLKTLRLSRSIPLEKLSTLLRRAPQLVEFGTGA
YSAEIRRDLYKGLSDAFSGCQELKELSGFWDVVPSYIPAFYPACSRITSLNLSYATIRCP
DVTKIILQCSNLQRLWVLDYIEDTGLDALSLYCKDLRELRVFPSDPFMADANVSLTEQGL
VLVSERCTKLQSILYFCRQMSNSALIAIARNRPNLTCFRLCILEPRAPDYRTFEPLDVGF
GAIVDRCKDLQRLSLSGLLTDRVFEYIGARAKKLEMLSIAFAGDSDLGLHHVLSGCDSLR
KLEIRDCPFGDQALLANVSKLETMRSLWMSSCSVSLGACKLLSQKMPRLNVEVIDERGDL
DSRPDNCTVEKLYVYRTVAGPRFDMPSFVRTMDRYPATCI
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggtgtgccggtttccagaggaagtacttgagcatgttttcttgttcataacctcgcat
cacgaccggaatgttgtatcattagtgtgcaagtcctggtatgacatcgagaggtattgc
aggaggacgatattcattggaaactgttacgcagtgaatccgaagatgatgattagaagg
tttccagaggtgagatctttggagctgaaagggaaaccgcattttgcggattttaatctg
gtgcctgatggttggggaggatattttcatccttggatatctgagatgtctagggcatac
ccgcggttagaggagattaaacttaagaggatggtggtcactgatgattgcttggagttg
atcgccaagtctttcaagaactttaaagttttggttttgtcatcgtgtgagggtttcagt
accgatggacttgctgccattgccgctaattgcagaaatcttagagcattggatctgcgg
gagtgtgaagtggacgaccagagtggccattggctaagtcattttccggattcttgtacc
tcattggagtctcttaacatgtcttgcttgggttctgacgttagcttctcagcactccaa
cgtctcattgctcgttcacccaacttaaagactcttagactcagtcgatccattcccctt
gagaaactatctaccctgctacgccgggccccacagcttgttgaatttggtacaggtgcc
tattctgcagaaatcaggcgtgatttatataaaggtttatcagatgctttctccggatgc
caggagcttaaggaactttctgggttttgggacgttgtaccatcttatattcctgctttt
tatcctgcttgttctaggatcacatccttaaacttgagttatgccactattcgttgtcca
gatgttaccaagatcatccttcagtgctctaatctgcagcgtctatgggtactggattac
attgaggataccgggctagatgctctttctttatactgtaaagacctaagagaattaaga
gttttcccatctgacccatttatggccgacgcaaatgtatccttaacagaacaaggcctt
gttttagtttctgagcggtgcaccaagctccagtccattctttacttctgcaggcagatg
tctaattctgcattaatcgccattgctaggaaccggcctaacctaacttgcttccgactc
tgcattcttgaaccacgtgctcctgattaccgaacatttgaaccccttgatgttggtttt
ggagccatagtagaccgctgtaaagatcttcaacgtctctcattatcgggtctcctcaca
gaccgtgtgtttgaatacattggggcacgggctaagaaattagagatgctctctatagcc
tttgcgggtgatagcgatttgggcttacatcatgtgttgtcgggctgtgacagccttcgg
aagcttgagattcgagattgcccgttcggggatcaggctctcttggctaatgtttctaag
ttggagacaatgcgatccctttggatgtcttcatgctcggtcagtcttggtgcatgtaag
ctgctgagtcagaagatgcctaggcttaatgttgaagttatagatgagcggggggatttg
gattccagaccagataactgtactgtcgagaaactttatgtataccgcacggttgcagga
ccacggtttgacatgcctagctttgtaaggactatggatcgatatcctgcaacctgcata
taa
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