Erigeron canadensis (horseweed): 122581802
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Entry
122581802 CDS
T07610
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122581802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122581802
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122581802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
WDR55
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR41
eIF2A
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_DCAF4
NBCH_WD40
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_Vps41
WD_LRWD1
Tricorn_2nd
WD40_like
B-prop_COPA_B_2nd
Beta-prop_DCAF12
WDR54
Motif
Other DBs
NCBI-GeneID:
122581802
NCBI-ProteinID:
XP_043610019
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Position
9:15421414..15431533
Genome browser
AA seq
731 aa
AA seq
DB search
MMYNDPQQQQPMYQQQQHPLPPPPPPQQQMMHQQQPPPHQFHHQQPPPQQQQQQMMRQPS
ASSTTLNAPPPDYSQQNFSHSHPSFDAHVNADSFAAKRMRKIGQRRAVDYTSTVVRYMQS
RLWQRDSRDRTVLQPTPAAAIDMLPTVAYSDNPSTSFAAKFVHTSLNKNRCSINRVLWTP
TGRRLITGSHSGEFTLWNGQSFNFEMILQAHDQPIRSMVWSYNDNWMVTGDDGGSIKYWQ
NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK
SVDWHPTKSLLVSGAKDNLVKLWDAKSGKELSSFHGHKNTVLCVKWNQNGNWVLTASKDQ
IIKLYDIRAMKELQSFRGHKKDVTALAWHPFHEEYFVSGSFDGSIFHWVVGHETPQIEIQ
NAHDGGVWDLAWHPIGYLLCSGSSDNTTKFWCRNRPGDPARDKLNTGQNQGYSEQNSAFA
GRMSVNFSGSEPPTTPGPFAGMNRNEGTIPGIGVAMPLSLDTSTQGDQKQAISSSMPPGA
PPLPPGPHPSLFAANQQQQYQQNPQQPHHHHQMTPLQPPNMQHPSHMPLLPHPHLPRPPP
QLPPHNMPSSMPGSMPMHGQMGPMNQMGPPMQQGHFMGMNPMHSGPGGPPPGSMPNMQGP
SSAGGNQMYSPGGAFNRPQGAQMPPMPGLGPYQPGNPSGGGMGTGPPNYGMPSGIPPPLP
PGPPPHGQTPQ
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacaatgatcctcaacaacaacagccaatgtaccagcagcagcaacacccacta
ccaccaccaccgccgccgcaacaacaaatgatgcatcaacaacaaccaccgccccatcaa
ttccaccaccagcaaccgccgccacaacaacaacaacagcaaatgatgcgtcagccttct
gcttcctcaacaaccctcaatgctccacctccagattactctcaacaaaacttttctcat
tctcatccctctttcgacgcccatgtaaatgcagacagctttgctgccaaaagaatgagg
aaaattggacaaagaagagcggttgattatacgagtactgttgttcgatacatgcagagc
cgtttgtggcaacgagattcacgggacaggacagtgttacaacccactcctgctgcagca
attgatatgttaccaaccgttgcctattctgacaatccatctaccagctttgctgcaaag
tttgttcatacgtctctaaataaaaatcgctgttcaatcaaccgtgtgctgtggactcct
accggcaggcgtcttataactggttcacatagtggagaattcactttatggaatggccaa
tcattcaattttgaaatgattctgcaggctcatgatcagccaatcaggtctatggtatgg
agttacaatgacaattggatggtcactggtgacgatggtggctctataaagtattggcaa
aacaacatgaacaatgtgaaagcaaataaatctgcacataaagaatctgtacgtgatcta
agcttttgtagaacagatttgaagttctgttcatgctccgatgacaccactgttaaagtt
tgggactttgctcgttgccaggaggagcgttccttaaccggccatggctgggatgtgaaa
agtgttgactggcaccctactaagtctttactagtctctggtgcaaaagacaatcttgtg
aagctctgggatgctaaatcagggaaagagctatcttcatttcacggccataagaatact
gttctgtgtgtcaaatggaatcagaatggtaattgggtattaacagcttctaaggatcaa
attatcaagctatatgacattagggccatgaaagaactacaatcttttcgcggtcataag
aaggatgtcactgcattagcttggcatccattccacgaggagtattttgtcagcgggagt
tttgatggatctatctttcactgggtagttgggcatgaaactccacagattgaaattcaa
aatgcgcatgatggcggtgtctgggacctggcatggcatcccattgggtatcttctttgc
agtggtagcagtgacaacacaacaaaattttggtgcagaaataggcctggggatccagct
cgtgataaattaaacacaggtcaaaatcaaggttacagtgaacaaaactctgcttttgct
ggccgaatgtctgtaaatttctccggatctgagccaccaactactccaggaccatttgct
gggatgaacaggaatgaaggtacaattcctgggattggagttgcaatgccgttgtcgtta
gatacatcaacgcagggtgaccaaaaacaagccatatcctcatcaatgccaccaggagca
cctccgttgccaccaggtccacatccatcactctttgcagccaatcagcagcaacaatat
caacaaaatcctcagcaaccccaccaccaccaccaaatgacacctttgcaaccaccaaat
atgcaacatccatctcatatgccacttctaccacatcctcatttaccccgtccaccaccc
cagttgccacctcataacatgccatcttcaatgcctggatccatgcccatgcatggtcaa
atggggccaatgaatcagatgggtccgcctatgcagcaaggacattttatgggcatgaat
cctatgcattcaggaccaggaggtccaccacccggcagcatgccaaatatgcaaggtcca
tcaagtgcgggcgggaaccagatgtattcaccaggaggtgcatttaaccgacctcaaggt
gcacagatgcccccaatgccagggctaggtccatatcagcctgggaatccaagtggtggt
ggcatgggaacaggaccaccaaattacggtatgccttctggtattcccccgccacttcct
cctggccccccaccacatggacaaacaccgcagtag
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integrated database retrieval system
