Erigeron canadensis (horseweed): 122581828
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Entry
122581828 CDS
T07610
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122581828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122581828
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122581828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
EIF3I
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
PEP5_VPS11_N
Beta-prop_VPS8
NBCH_WD40
Beta-prop_SCAP
WD40_like
Beta-prop_LRRK2
VID27
B-prop_COPA_B_2nd
VPS8_N
Beta-prop_IP5PC_F
WDCP
Motif
Other DBs
NCBI-GeneID:
122581828
NCBI-ProteinID:
XP_043610060
LinkDB
All DBs
Position
9:22440380..22449097
Genome browser
AA seq
906 aa
AA seq
DB search
MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKSWQIYNCAKLSLVLVGPQLSNKIR
ALASYRDYTFAAYGNRIGVFKRAHQVATWIRHETKVNLLLLFGEHILSVDVKGNVFIWAF
KGTDENPAPVGHILLDGEFTPSCIMHPDTYLNKVILGSQDGSLQLWNISTKKKLYEFKGW
KTSISCCVSSPALDVIAVGCADGKIHVHNIRFDEELVTFSQSTRGAVTALSFRTDGQPLL
ASGGSSGVISIWNLEKRRLQSVIRDAHDSSVISLHFFANEPVLMSTSADNSIKMWIFDTT
GGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVTKR
AKKLKLKEEEIKLKPVIAFDVAEIRERDWSNVVTCHRDTPHAYVWRLQNFVLGEHILTPS
TDIKAPIKACAISSCGNFAILGTAGGWIEKFNLQSGLSRGSYVDVSEKSSAHSGEVVGVA
CDSTNSLLISAGYNGDIKVWSFKGRELKSKWEIGYTVVKIIYHRSNGLLATVTDDLVIRM
FDVVALKLVRKFEGHTDRITDICFSEDGKWLLSCSMDGTLRIWDVILARQIDAIRVDVPI
TALSMSPNMDVLATTHVDQNGVYLWVNQTMFSGPTHIDSYGSGKEVVNVKLPSISSVEGS
KDDVSDKPALSNSQPEAITHVTLLDQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEP
PKKPEKAPFFLPSIPSLSGEILFKASETTNDKAIQADQLDKSTRNTDFSFSPFVQFLKSS
AETKNFEAYTDYLKSLSPSTLDMELRMLQIIDDDDDQEPEKRPELLVLELILEYLIHEIS
CRNNFEFIQALIRLFLKIHGETIRRQSKLQTKAQKLLEAQSAVWQKLDGLFQNTRCMVTF
LSNSQF
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggggatatttgaaccttttcgtgcaattggatacataacaagcactgtccctttctct
gttcaacgtttaggcactgaaactttcgtcaccgtcagtgttggcaaatcctggcagatt
tacaactgtgccaagctcagccttgttcttgttggccctcaactttcaaacaagattcgg
gctctggcatcttatcgtgactatacatttgctgcatatggaaatcgtattggtgtattc
aagcgtgctcatcaggtggctacatggatcagacatgagaccaaggtcaacttgctgctt
ctgtttggagaacacatccttagtgttgatgtaaaaggcaatgttttcatatgggcgttc
aaaggaacggatgaaaatcctgctccagttggtcatatcttgctagatggcgaattcact
ccaagttgtattatgcatccagacacttacttaaacaaggtgattcttggaagtcaggat
ggttcacttcagctttggaacatcagcacaaagaagaaactttatgaatttaaaggctgg
aaaacctctatatcttgttgcgtttcttctcccgctttagatgtcattgctgttggctgt
gccgatggaaagattcatgttcacaacatccgttttgatgaagaacttgttacgtttagt
cagtctactcgaggtgctgtgactgctttgtcattcagaactgatggtcagcctcttcta
gcatctggaggttcatctggtgtcatcagcatatggaatcttgaaaagaggagactgcaa
tctgttattagagatgctcatgatagttctgtgatttcattgcatttttttgctaacgaa
ccagttctaatgagtacatctgcagacaactctataaagatgtggatattcgatacaact
ggtggtgatcctcgtttgttaaggtttcgaagtggacacagtgcaccacctctctgtata
aggttttatgctaacgggagacacattctatcggctggtcaagatcgtgctttccgcctt
ttctctgttattcaggatcaacaaagtagagaactttctcagcgtcatgtaaccaaaagg
gcaaagaaactcaaattgaaggaagaagaaataaagttgaagcctgtgatcgcatttgat
gttgctgaaattagggaaagggattggtcaaatgttgttacatgtcatagagatactccg
catgcttatgtctggaggctacaaaattttgtgcttggagagcacattctgacacctagc
acagatattaaagctccgattaaggcatgtgctatcagttcatgtggcaactttgcaata
ttaggcacagcaggtggttggattgagaagtttaatcttcaatcgggcttgagccgagga
tcttatgtggatgtttcagaaaaaagttctgctcacagtggagaggtggttggtgttgct
tgtgattcaacaaactccctactgatcagtgccggatataatggtgatataaaggtttgg
agttttaaaggacgtgagctgaaatccaagtgggaaataggttacacagtggttaagata
atctaccaccgttctaatggtcttttggctactgttacggatgatttagttattcgtatg
tttgatgttgttgcactaaaactggttcgtaagtttgaaggtcatactgatagaatcact
gacatttgttttagtgaggatggaaaatggcttttgtcgtgtagtatggatggcactctt
aggatttgggatgttattctagcaagacagattgatgctatacgtgttgatgtacctatc
actgctttgtctatgtcaccaaatatggatgttttggcaacaactcatgttgatcagaat
ggtgtctacctgtgggtaaaccagacgatgttttctggacccacacatattgattcatat
ggaagtggaaaggaagttgtgaatgttaaattaccatccatatcttcagtagagggttca
aaagatgacgtttctgataaacctgctttaagcaactctcagcctgaagccattactcac
gttacactgcttgatcaacaaatcccagacctagtcacactttcactgttgcctaagagt
cagtggcaaagcttgataaatttggacatcataaaggcccgcaacaagccaatcgagcct
ccaaagaaacctgaaaaggcacctttctttttgccttcgataccatctctctctggtgaa
atattatttaaagcaagtgaaacgactaatgataaggccatacaagctgatcagcttgat
aaatctactcggaatacagatttttccttttcgccgtttgtacagtttctcaagtcatct
gctgaaacgaaaaactttgaggcgtacacagattatctaaaaagtttatccccgtccaca
ttggatatggaattaaggatgcttcagatcattgatgatgatgatgatcaagaacctgaa
aagagaccagagctacttgtccttgaacttatactcgaatatttaatacatgaaatctca
tgcagaaacaactttgagttcatacaggctctaattcgactgttcttgaagatacatggt
gaaactatcagacgacaatccaagttgcaaaccaaggcccagaagcttttagaagctcaa
tctgctgtctggcagaagttggatgggttatttcagaatacaagatgcatggttacattt
cttagtaactcacagttttga
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