Erigeron canadensis (horseweed): 122581898
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Entry
122581898 CDS
T07610
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122581898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122581898
03012 Translation factors [BR:
ecad03012
]
122581898
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122581898
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122581898
Translation factors [BR:
ecad03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122581898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
Rad17
nSTAND3
Motif
Other DBs
NCBI-GeneID:
122581898
NCBI-ProteinID:
XP_043610149
LinkDB
All DBs
Position
9:complement(32211705..32219338)
Genome browser
AA seq
1029 aa
AA seq
DB search
MRAHFLPLHLRSFSPRFITKHSHFPTTFQYSTTSIMSYRPNSQGGGRRGGSSRGGGGRGG
GRRGGGGGGRGEQRWWDPVWRAERLKQMQGEVEVFDKNHWWGKMEEMKKGGEVELVIKHF
FSRADQQTVSDMAYQLGLYFHAYNKGKALVVSKVPLPNYRADLDERHGSAQKEIHMSTET
ERRVENLLDSSTGTQKVDNILGTSIQSVKKLPQESDKTARISVLERDSAKKALSVELKER
QEKQKELERVKAMCVFREKLPAHKMKSDFLKAVAANQVLVVSGETGCGKTTQLPQFILEE
EISSLRGSDCNIICTQPRRISAISVSARISNERGENLGETVGYQIRLESKRSELTRLLFC
TTGVLLRKLVQDPSLTGISHLLVDEIHERGMNEDFLLIILRDLLPKRPDLRLILMSATIN
ADLFSKYFGNAPTIHIPGLTFPVQELFLEDVLEKTRYAVKSESDSYQGYSKRRRRQQESK
TDPITEQFEDADISSVYKSYSANTRQSLEAWSGSETDLGLIEATIEYICRHEGPGAILVF
LTGWDEISKLLDNVKINNFLGDPTKFLVLPLHGSMPTINQREIFDRPPPGMRKVVLATNI
AESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYR
LYPKMVHDAMLQYQLPEILRTPLQELCLQIKSLQLGAIGSFLAKALQPPDALSVQNAIEL
LKTIGALDDTEELTPLGRHLCTLPVEPNIGKMLLMGSIFQCVNPALTIAAALASRSPFVL
PINRKEEADDAKRSFAGDSCSDHIALLKAFEGWKEAKRSGSERSFCWENFLSMQTMKMIA
DMRLQFLDLLSDIGFVDKSKGANTYNQYSDDMEMVCAVLCAGLYPNVVQCKRRGKRTALY
TKDVGKVDIHPSSVNAGVHLFPLPYMVYSEKVKTSSVYVRDSTNISDYALLMFGGNLIPS
KNGDGIEMLDGYLQFSASKSVLGLIKKLRGEVDRLLKRKIEDPKVDVNVEGKGVVAALVE
LLHNQNVRY
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcacacttcttgcctttacacttgcgctctttttctccgcgtttcatcactaaa
cattctcacttcccaaccactttccaatactccacaacttccatcatgtcttaccgtccc
aattctcaaggcggcggccgtcgtggtggcagcagccgcggcggaggaggtcgcggcggg
ggtcgacgtggcggcggtggcggtggacgaggtgaacaaagatggtgggaccctgtttgg
cgtgctgaacgccttaaacaaatgcaaggagaggtagaggtatttgataagaatcattgg
tggggaaagatggaggaaatgaagaaaggaggagaggtggagttggtaataaaacatttc
tttagtagagctgatcaacaaacagtttcagatatggcgtatcagcttggcctttatttt
catgcatacaacaaaggcaaggcacttgtggtgagcaaagttccattaccgaattaccgg
gctgatcttgatgagcgccatggatctgcacagaaagagatacacatgtctacagaaact
gagagacgagttgagaatctgttggatagttcaacagggactcagaaagttgataacatt
ttgggtacatccattcagagtgttaaaaaattacctcaagaatcagataaaactgctaga
atatcagttttggagagagatagtgccaaaaaggcacttagtgttgaactcaaagaaaga
caggaaaagcagaaggaacttgaacgtgttaaggcaatgtgtgtatttagagagaagctt
cctgcccacaaaatgaaatccgactttttaaaagccgttgctgcaaatcaggtattagtg
gtttctggggaaacagggtgtggcaaaactactcagcttcctcagttcattttagaggag
gaaatatcttctttacgtggttctgactgtaatatcatatgcacccaacctcgccgtata
tctgctatatctgtttctgcccgaatatccaatgaaaggggagaaaatcttggtgaaact
gtcggttatcagatccgtttggagtcaaaacgttctgaactaacaagattattgttttgt
acaacaggagtgctgcttaggaaattggttcaagacccgagcttaacaggaatcagccat
ttgctggttgatgaaattcatgaaagaggaatgaatgaggattttcttttaataattttg
cgtgatcttctccctaaacggccagacttacgacttatattgatgagtgctactattaat
gctgacttgttctccaaatattttgggaatgccccaaccattcacatcccggggttgaca
tttcctgtgcaagagctatttctagaagatgtacttgagaaaacccgttatgcagtgaaa
tcagagtccgatagttatcaaggatattctaagaggcgtaggagacaacaagagtctaag
actgatcccatcactgagcaattcgaggatgcggacatcagttctgtatacaagagctac
agcgcaaatacgagacaatctctggaagcttggtctggttcagaaacagacttgggtctt
atagaagcaacaatcgagtatatctgccggcatgaaggtccaggggctattctggtgttt
cttactggttgggatgaaatctcaaagctgcttgacaatgtgaaaatcaacaattttctt
ggtgatcctacaaagtttcttgtccttcctcttcatggttcaatgcctactatcaaccaa
cgtgaaatattcgaccgccctcctccaggcatgaggaaagtggttttagcgactaatatc
gctgagagtagtataaccatagatgatgtggtttatgttattgactgtggaaaagctaag
gagactagttatgatgctttaaacaagctggcttgtctactaccatcatggatatcaaaa
gcttcagcacatcagagacgtggtcgtgctggtcgtgtacagcctggagtatgttataga
ctgtatccgaaaatggtccatgatgctatgctccagtatcaactacctgaaattctccga
acacctttacaagaactgtgcttgcagataaagagcctgcaacttggagccattggatct
ttcctggctaaggcactccagccccctgatgctctttcggttcaaaatgccattgaactt
cttaagaccattggggctctagatgatacagaagagctcactccacttggacgtcatttg
tgcactctcccagtggagccaaatatagggaagatgcttcttatggggtcaattttccaa
tgtgttaatcctgcattgacaattgctgctgctcttgcatctcgcagcccatttgtcctt
ccaattaatcggaaagaggaagctgatgatgcaaaaagatcctttgccggtgattcatgc
agtgaccacatagctcttcttaaagcatttgaagggtggaaggaagcaaaaaggtctgga
agtgaaagatcgttctgttgggaaaatttcttgtcaatgcaaaccatgaaaatgatagcg
gacatgaggctccagtttttggatttactgtcggatattggctttgtagataaatccaag
ggtgctaatacttataaccaatacagtgatgacatggagatggtatgtgctgtactatgt
gctggtctgtatccaaatgtcgttcaatgcaaaagaagaggaaaacgaacagccctttat
accaaagacgtcgggaaagtcgatatccatccttcatcggtcaatgccggtgtccatctt
ttccctcttccttacatggtttatagtgaaaaggtgaaaaccagcagcgtatacgttcga
gactccacaaacatatcagattatgctcttctaatgttcggtggtaatctcattccaagc
aaaaatggagatggtatcgagatgctcgatgggtacctccagttttctgcatccaagagt
gtgctgggattgataaagaaactacgaggagaagtagatagattgttgaaacggaagatc
gaagatccaaaggttgatgtaaatgttgagggaaaaggagttgttgctgctcttgtcgag
ttactgcacaaccagaatgttcgttattaa
DBGET
integrated database retrieval system
