Erigeron canadensis (horseweed): 122582388
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Entry
122582388 CDS
T07610
Name
(RefSeq) U1 small nuclear ribonucleoprotein C-like
KO
K11095
U1 small nuclear ribonucleoprotein C
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122582388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122582388
Spliceosome [BR:
ecad03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
122582388
Complex B
122582388
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-U1
CLIP1_ZNF
Motif
Other DBs
NCBI-GeneID:
122582388
NCBI-ProteinID:
XP_043610709
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Position
9:8524061..8528131
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AA seq
263 aa
AA seq
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MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQYEAQQNQYLIDQKVKEHLGQ
AAAFQQVGGAYNPLRPRLPILPMPIPGNPQMAMNPALYPGMRPLAPLPRPIPGTAGYPGM
PPTLAPPGAPSMPGQVNPSIPGQGNPLLSGQVNQTMPGQVNPSMPGQVNPSMPGQVNPLM
PGQVNPSMPGQINLSMPGQVNNGMPRPITLNAPIMAPGSAGTPASGAPPTMFTPTMYQAN
PIVQARGGFESPNANTQPQEANR
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgccccggtattattgtgattactgtgatacgtacttgacccatgattcgccttctgtc
aggaagcagcacaatgccggctacaaacacaaggcaaatgttcgaatatattatcagcaa
tatgaggcacaacaaaaccaatatttaattgaccaaaaggttaaggagcatcttggacaa
gctgctgcattccagcaagttggtggtgcttacaacccactgagaccccgtcttcctatt
ttacctatgccaataccaggaaatccacagatggcgatgaatccagcattataccctgga
atgagaccgcttgcccctttgccaagacctattcctggtactgcaggataccccggaatg
ccaccaacgctcgcaccacctggtgccccttccatgccaggtcaggttaacccgtccata
ccaggtcagggcaacccattgttgtctggtcaggtcaaccaaacgatgcctgggcaggtc
aacccatcgatgcctggtcaggtgaacccatctatgcctggtcaggtgaacccattgatg
cctggtcaggtcaatccatcaatgcctggtcagatcaacctatctatgcctggtcaggtt
aacaatggtatgccaaggcccataacgttaaatgcccctataatggccccagggagcgca
ggaacccctgcttctggtgcaccacctacaatgtttacaccaaccatgtatcaagccaac
ccaatagtacaagctcgtggaggttttgaaagtccaaatgccaatacccaacctcaggag
gctaaccgttaa
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