Erigeron canadensis (horseweed): 122582725
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Entry
122582725 CDS
T07610
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03440
Homologous recombination
ecad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122582725
03460 Fanconi anemia pathway
122582725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecad03032
]
122582725
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122582725
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
122582725
DNA replication proteins [BR:
ecad03032
]
Eukaryotic type
DNA Topoisomerases
122582725
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
122582725
FA (Fanconi anemia) pathway
122582725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF
Zn_ribbon_GRF_2
zf-C2H2_10
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
122582725
NCBI-ProteinID:
XP_043611083
LinkDB
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Position
9:complement(26556159..26569893)
Genome browser
AA seq
939 aa
AA seq
DB search
MAASRRPIKVLNVAEKPSVAKTVSTILSGNQGFRTREGRSRYNKIFEFNYMINEQPCHMV
FTSVTGHLMEIDFEPRYRKWHSCDPLDLFHAPICKYVPEDKVDIKRTLEEEARKCQWLVL
WLDCDPEGENIAFEVVEVCLSVNSHLTIKRATFSTLTTQLHEKVKMLVQPDQFVSAAIDV
RQEVDLRIGASFTRFLTMLLKDAFVFDVPTDGTNLILSYGPCQFPTLGFVVERYWEILAH
EPEEFWKIQCSHTTDEGTANFSWMRGHLFDHTCAVLLYEMCVQEPIATVTNILQKEEKKL
PPYPLNTLELEKRASRYFRMSSEQTMKIAEELYQSGFISYPRTETDLFSEGTDLRILVQE
QQEHPVWGPYAQRLLDPSSGLWMIPLNGGHDDKAHPPIHPTKFSPGEPGWSENHKKVYEL
VVRHYLACVSQPAVGAGTTVDIDIAGEMFSARGRIILARNYLDVYRFEKWGGSLIPSYTI
GQQFTPTSMTLESGITRPPPLLSESDLLELMFRKGIGTDATMHDHIKKLTDRFYATKEAL
HFKPTNLGEALVMGYDDMRLTHELWKPELRSMMEKYMKDVGGRKMRKDDALASCLQIMKT
CFLDARLNKVKLFEAFEIYFDRTNRTGGDEQHNHGQLVRKCDVCQESELFLRKKPDGKFM
IGCLAFPQCRNVIWLPGSISEATVTPTVCDTCTPGPIFKIQFTFRQREIPLHFNIHHLGC
VGGCDDVMRELIEISGFGRHNFTRAPATGRGTTAPSRNDPQNNQQRTRGRGTTAPLRNGS
QNNPQQNTCSFCHQTGHSSSDCYSGTSQNRSSRFQRVNAHDGDPVIPCTTCGSPCSLKTA
NTEANRGRKFYSCQAQGCKFFVCWEDSVPSTRGGGSYSNNASTSAANTSRRGGRGGGRAN
SSDVRFVSATGDPVSGRSCFICGDPSHFANVCPNRAMRN
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaagccgaagaccgatcaaggtactaaacgttgccgaaaagccatcggttgcg
aaaaccgtatccacaatcttatcaggaaaccagggttttagaacccgagaagggagatca
agatataacaagatattcgaatttaattacatgattaacgaacagccatgtcatatggtg
ttcactagtgttacagggcatctaatggagatcgatttcgaaccccggtatcgaaagtgg
cattcttgtgatcctcttgatctgtttcatgctcctatttgtaaatatgttcctgaggac
aaggtagacatcaaaaggaccttggaggaggaagccagaaaatgccaatggcttgtcttg
tggcttgattgtgatccagaaggagagaacattgcatttgaagttgtggaagtttgctta
agtgtaaattctcatctcaccattaagagggcaacgttctctacattaacaacgcaactt
cacgaaaaggtcaaaatgcttgtacagcctgatcaatttgtctctgctgctatagatgtt
aggcaagaagtagatcttcgaataggtgcttccttcacgagatttctgacaatgctactg
aaagatgcatttgtttttgatgttcctacagatggcacaaaccttattctaagttatggt
ccttgtcagtttcccacattgggatttgtcgtggaacggtattgggagatcttagcacat
gaacctgaagagttttggaagatccagtgttcacatacaactgatgaaggaactgctaac
tttagttggatgcgtgggcatttgtttgatcacacctgtgccgtactactttatgagatg
tgtgtccaagaacccattgcaaccgtcacgaatattctacagaaagaggagaaaaaactc
cctccttacccattaaacactcttgagctagaaaaacgagcatcacgttattttagaatg
agttctgaacaaaccatgaagattgcagaagagctctatcagtctggtttcataagctat
cctcgtacagagactgatttgttttcagaagggactgacttgcgtatacttgtacaagaa
caacaggagcatcctgtgtggggtccatatgcccaacgactcttggatccttcatcagga
ctttggatgataccacttaatggtgggcatgatgacaaagcccatcctcctattcaccca
acaaaattttcacctggagaacctggatggagtgagaatcataaaaaagtgtatgagttg
gttgttcgacattatttggcatgtgtttctcaaccggctgttggagctggaactacagta
gatattgacattgctggtgagatgttttcagcaagaggaaggataatacttgctagaaat
tatttggatgtctatcgattcgaaaaatggggtggatcacttatcccaagctacacaatt
ggacagcagttcactccaacatctatgacccttgaatcagggattacaagaccaccaccc
ctcttaagtgaatctgatcttctagaactaatgttcaggaaaggcattggcacggatgct
acgatgcatgatcatataaagaagctgactgatcggttttatgctactaaagaggcgttg
catttcaagccaactaatcttggtgaggcattagttatgggatatgatgatatgcgcctc
actcatgaactttggaagccagaacttcgcagtatgatggaaaagtacatgaaagatgtt
ggtggtagaaaaatgagaaaagatgatgctttagcaagttgcttacagattatgaagact
tgctttttagatgccaggttaaataaagtcaaacttttcgaagcctttgaaatttacttt
gacagaacaaatagaaccggtggggatgagcaacataatcatggacagcttgtgcggaaa
tgtgatgtttgccaggagtcagaattgtttcttaggaagaaaccggatggaaagttcatg
attggttgcttggcttttcctcagtgcagaaacgtcatctggcttcctggatccatatca
gaagcgactgttactccaactgtttgcgatacatgtactccaggacctattttcaagata
cagttcacatttcgccagcgggaaatacctctacacttcaatatccaccatttaggctgt
gttggtggctgtgatgatgttatgagagagcttattgaaatatctggttttggacgtcac
aattttacaagggcaccagcaacaggacggggaacaactgcaccttccaggaatgatcct
caaaataaccagcagcgaacaagaggacgcggaaccactgcacctttaaggaacggctct
caaaataacccgcagcagaatacttgcagcttctgtcaccagacaggacattcatcaagt
gattgttattcagggacttctcagaaccgtagttctcgttttcagagagtcaacgctcat
gatggtgatccagtgattccttgcactacctgtggttcgccctgctctttaaaaaccgcc
aacacagaggccaataggggaagaaaattctactcatgtcaggcacaaggttgcaagttt
tttgtctgttgggaagatagtgtcccttctaccagaggtggtggcagctattccaacaat
gcaagcacttcagctgcaaacaccagcaggagggggggtcgagggggaggtagagctaac
agcagtgatgttagatttgtatcggctacaggtgaccctgtttctgggagaagctgcttt
atctgtggtgatccatcacattttgcaaacgtctgcccaaatcgtgctatgcgtaactga
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