KEGG   Erigeron canadensis (horseweed): 122582846
Entry
122582846         CDS       T07610                                 
Name
(RefSeq) protein DAMAGED DNA-BINDING 2
  KO
K10140  DNA damage-binding protein 2
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03420  Nucleotide excision repair
ecad04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122582846
  09124 Replication and repair
   03420 Nucleotide excision repair
    122582846
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ecad04121]
    122582846
   03400 DNA repair and recombination proteins [BR:ecad03400]
    122582846
Ubiquitin system [BR:ecad04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     122582846
DNA repair and recombination proteins [BR:ecad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      122582846
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_Prp19 WD40 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_EML WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I WD_LRWD1 WD40_RFWD3 WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_DCAF4 TAF1C_beta-prop
Other DBs
NCBI-GeneID: 122582846
NCBI-ProteinID: XP_043611215
LinkDB
Position
9:3908881..3915837
AA seq 564 aa
MAARARRTTSFPEVVIERDSDTDESSDDEEDDDLEIENDVVESDDNAVDKEEEDEVQNDV
VSANVKGKAPITISLKKVCKVCKKTGHQAGFQGANYIDCPMKPCFLCKLPGHTTVNCPHR
AAMEFGVIPASRKRTNNPFDYVFERQMRHKVPSIKPEFVIPDEVNCAVIRYHSRRVTCLE
FHPTNNNILLSGDKKGQLGVWDFGKVYEKTVYANIHNCLLNNMKFSPANDGTVYTASSDG
TVSSTDLETGLSTCLMDLNPGGWQGPKNWRMLYGMELNAEKGVLLVADSSGFLHLVDVRS
DSKKGDSVLIHKKGTKVVGLHCNPVQPDLLLSCGNDHFARIWDMRRLEAESFLHGLPHKR
VVNSAYFSPLSGSKIVTTSIDNRIRVWDSIFGDLDTPSREIVHSHDFNRHLTPFRAEWDP
KDPSESLVVVGRYISENYNGAALHPIDFIDTSTGQLVAEVMDPNITTISPVNKLHPRDDV
LASGSSRSLFIWRPKEKSEMAQEKEERKIILCDRKNIKKFGDESDNDDDDSGDDFSSKKG
KSLKHKKAKIVVTTPCSSSKKKKS
NT seq 1695 nt   +upstreamnt  +downstreamnt
atggcggcacgagcaagacgaacgacgtcgtttccggaggtagttattgagagagacagc
gacactgacgaaagttccgacgacgaagaagatgatgatttagaaattgaaaacgacgtc
gttgaatctgatgataacgccgttgataaagaagaagaagatgaagttcaaaacgatgtc
gtttcagccaatgtgaaagggaaagcaccaattactattagtcttaaaaaagtctgtaag
gtttgtaagaaaactggacatcaagcggggtttcaaggagctaattacattgattgtcca
atgaaaccttgttttctctgcaaattgcccggtcacacgacggttaattgtcctcatcga
gcggctatggagtttggggttattccagcttctcgtaaaagaacaaataacccatttgat
tatgtatttgaacgccaaatgcggcataaagttccttctataaaaccagaatttgtgatc
ccggatgaagtgaattgtgcagtgattagataccatagtagacgggttacgtgtttggag
tttcatccgactaataataacattctcttgtcaggagataagaaaggacaactaggagta
tgggatttcggcaaggtgtatgagaagactgtatacgcgaacatacataactgcctactc
aacaatatgaagttcagtccagcaaatgatggaacagtgtatacagcctcttcagatgga
accgtcagttcaacagacttagagactggtttgtcaacgtgtttgatggacctaaatcct
ggcgggtggcaggggcctaaaaattggagaatgctatatggtatggagcttaatgcagag
aaaggtgtcttgttagttgcggatagctctggattcttacacttggtggatgtaagatcc
gattctaaaaaaggagattcagttctgatccataagaaaggaacaaaagttgtgggactg
cactgcaaccctgttcagccagatcttcttttgagctgtggaaatgatcactttgctcgt
atatgggatatgcgccgattagaagccgaatcgtttcttcacgggcttccacacaaacgg
gtggttaactctgcttatttttctcctctgagtggaagcaaaatagtcacaacatcaata
gataaccgaatccgtgtgtgggactctatatttggcgacttggacacaccaagccgagaa
attgtgcacagccatgattttaatcgacatttgactccatttcgagcagagtgggaccca
aaggatccatcagagtcccttgtggttgttgggcgttatataagtgaaaactataatgga
gctgctttacatcctattgattttatagacaccagcacaggccaactagttgctgaggtt
atggacccaaacataaccacaatcagtccggtgaacaaattgcatccgcgagatgatgtt
ttggcatcgggtagttcaaggtctctgttcatttggaggccaaaagagaaatccgagatg
gcgcaagagaaggaagaaagaaaaattatcctctgtgataggaaaaatatcaagaaattt
ggagatgaaagtgacaacgatgatgatgattccggtgatgatttttctagcaaaaaaggt
aagagtttaaagcacaaaaaagcaaagatagtagtaactactccatgtagcagcagcaag
aagaaaaagtcttaa

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