Erigeron canadensis (horseweed): 122582846
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Entry
122582846 CDS
T07610
Name
(RefSeq) protein DAMAGED DNA-BINDING 2
KO
K10140
DNA damage-binding protein 2
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03420
Nucleotide excision repair
ecad04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122582846
09124 Replication and repair
03420 Nucleotide excision repair
122582846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122582846
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122582846
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122582846
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
122582846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
EIF3I
WD_LRWD1
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
TAF1C_beta-prop
Motif
Other DBs
NCBI-GeneID:
122582846
NCBI-ProteinID:
XP_043611215
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Position
9:3908881..3915837
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AA seq
564 aa
AA seq
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MAARARRTTSFPEVVIERDSDTDESSDDEEDDDLEIENDVVESDDNAVDKEEEDEVQNDV
VSANVKGKAPITISLKKVCKVCKKTGHQAGFQGANYIDCPMKPCFLCKLPGHTTVNCPHR
AAMEFGVIPASRKRTNNPFDYVFERQMRHKVPSIKPEFVIPDEVNCAVIRYHSRRVTCLE
FHPTNNNILLSGDKKGQLGVWDFGKVYEKTVYANIHNCLLNNMKFSPANDGTVYTASSDG
TVSSTDLETGLSTCLMDLNPGGWQGPKNWRMLYGMELNAEKGVLLVADSSGFLHLVDVRS
DSKKGDSVLIHKKGTKVVGLHCNPVQPDLLLSCGNDHFARIWDMRRLEAESFLHGLPHKR
VVNSAYFSPLSGSKIVTTSIDNRIRVWDSIFGDLDTPSREIVHSHDFNRHLTPFRAEWDP
KDPSESLVVVGRYISENYNGAALHPIDFIDTSTGQLVAEVMDPNITTISPVNKLHPRDDV
LASGSSRSLFIWRPKEKSEMAQEKEERKIILCDRKNIKKFGDESDNDDDDSGDDFSSKKG
KSLKHKKAKIVVTTPCSSSKKKKS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacgagcaagacgaacgacgtcgtttccggaggtagttattgagagagacagc
gacactgacgaaagttccgacgacgaagaagatgatgatttagaaattgaaaacgacgtc
gttgaatctgatgataacgccgttgataaagaagaagaagatgaagttcaaaacgatgtc
gtttcagccaatgtgaaagggaaagcaccaattactattagtcttaaaaaagtctgtaag
gtttgtaagaaaactggacatcaagcggggtttcaaggagctaattacattgattgtcca
atgaaaccttgttttctctgcaaattgcccggtcacacgacggttaattgtcctcatcga
gcggctatggagtttggggttattccagcttctcgtaaaagaacaaataacccatttgat
tatgtatttgaacgccaaatgcggcataaagttccttctataaaaccagaatttgtgatc
ccggatgaagtgaattgtgcagtgattagataccatagtagacgggttacgtgtttggag
tttcatccgactaataataacattctcttgtcaggagataagaaaggacaactaggagta
tgggatttcggcaaggtgtatgagaagactgtatacgcgaacatacataactgcctactc
aacaatatgaagttcagtccagcaaatgatggaacagtgtatacagcctcttcagatgga
accgtcagttcaacagacttagagactggtttgtcaacgtgtttgatggacctaaatcct
ggcgggtggcaggggcctaaaaattggagaatgctatatggtatggagcttaatgcagag
aaaggtgtcttgttagttgcggatagctctggattcttacacttggtggatgtaagatcc
gattctaaaaaaggagattcagttctgatccataagaaaggaacaaaagttgtgggactg
cactgcaaccctgttcagccagatcttcttttgagctgtggaaatgatcactttgctcgt
atatgggatatgcgccgattagaagccgaatcgtttcttcacgggcttccacacaaacgg
gtggttaactctgcttatttttctcctctgagtggaagcaaaatagtcacaacatcaata
gataaccgaatccgtgtgtgggactctatatttggcgacttggacacaccaagccgagaa
attgtgcacagccatgattttaatcgacatttgactccatttcgagcagagtgggaccca
aaggatccatcagagtcccttgtggttgttgggcgttatataagtgaaaactataatgga
gctgctttacatcctattgattttatagacaccagcacaggccaactagttgctgaggtt
atggacccaaacataaccacaatcagtccggtgaacaaattgcatccgcgagatgatgtt
ttggcatcgggtagttcaaggtctctgttcatttggaggccaaaagagaaatccgagatg
gcgcaagagaaggaagaaagaaaaattatcctctgtgataggaaaaatatcaagaaattt
ggagatgaaagtgacaacgatgatgatgattccggtgatgatttttctagcaaaaaaggt
aagagtttaaagcacaaaaaagcaaagatagtagtaactactccatgtagcagcagcaag
aagaaaaagtcttaa
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