Erigeron canadensis (horseweed): 122583910
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Entry
122583910 CDS
T07610
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122583910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122583910
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
122583910
SWR1 complex
122583910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
DBINO
Myb_DNA-bind_6
Iron_traffic
Motif
Other DBs
NCBI-GeneID:
122583910
NCBI-ProteinID:
XP_043612217
LinkDB
All DBs
Position
9:32792770..32805101
Genome browser
AA seq
1996 aa
AA seq
DB search
MASKGPRSKIDHESRAKRQKGLEPPKEPRRPRTHWDHLLEEMVWLSKDFESERKFKLALA
KKVATRASKGMVDQATRGERKVKEEELRMKKVALNISKDVKKFWTKIEKLVLYKHRLEVD
QKKKKVLDKQLEFLLGQTERYSTMLAENLVDSSSLQQVPSYSKQEQPATEYKDQTYVNGC
AESHNESQSNNLETDEDYKSENEPEDDEHTIEEDEALITEDERREELAALQNEVDLPLEE
LLARYTGGEVTTEGTPGKNEDVVELTKAREDVTQCNGNDTSEHKSKEESRPCAESNGILS
FPKRRLEIKEHYVRKRKRLQEGKKYMELDLNDEKDDGDFVAANGEDKDDETTLLEEEELA
KAEHDDSVDEIALLQKESEIPIEDLLARYRQDPDTNRSTDDGSESEGASVSENLSNTSIQ
EDLEVDSSVDIQHVSTNDVDVPPETLTEHEDQQDKLVDEGGENEDRIADAAAAARSAQPT
GNTFLTTKVRTKFPFLLKFSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALL
AHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKARKHKRQGWMKPHS
FHVCITTYRLVIQDSKIFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNTKRRILLTGTP
LQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVDGQEKVNKEVIDRLHNVLRPFI
LRRLKRDVEKQLPSKHEHVIYCRLSRRQRNLYEDFIASSETQATLASSSFFGMISVIMQL
RKVCNHPDLFEGRPIISSFDMRGIEVQFCSSVCTILAPSQFSAVDLCGLGFVFTHLDYDM
TSWESDEVQAIETPSRLIEARVEELEVKIKSGKKSNGFNIFEEIQKALQEDRLKEMKERA
ASIAWWNSLKCKRKPVYSTGLRDIVSFHNQSQNPVSSKLAEIILSPVDRFKKMVDQVESF
MFAIPAARAPPPVGWCSKSGSSVFINRAYKDKCSTLLSPLLTPIRPAIVRRQVYFPDRRL
IQFDCGKLQELAVLLRRLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEE
RQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQ
TREVHIYRLISECTIEENILKKAKQKRALDDLVIQSGEYNTEFFKKLDPMELFSGHGTVS
VNNMQKDKTLINGADVNPPVSNADVEAALKHAEDEADYMALKKVEQEEAVENQEFTEEPT
GRLEDDELLNDEDGDHAGLVTENPQTPKWSEPNEEAGMSLVNIDDDDVDMMDDVKQMAAA
AAASGQEISSFENQLRPIDRYAVRFLELWDPIIDNALIEVQDRFEEAEWELDHIEKLKDD
MEAEIDDDEEPLVYESWDTEFATKAYQEQVKVLTEHQLMEDREREAREKLAREKELAREK
ELAEYEAMRIETIVKKPKSKKKAKKTKFKSLKEEALSYDSKTTNVVSPIEFDDDFDDELM
FVKKRKKPIEESEVKISKKSKKSKKNTEPRLLDFDSNSIPEQQDEPKDLKLSGTSFNLEV
EQKTNNRSKMGIKISVISMPVKRVMTIRLEKLKKGSIWPNDCFPTPDSWLSSEDALLCAV
VHEYGINWSLASDVLYGMTAGGLYRGIVRHPVHCCERYRELVQRYVLSNSENLHNEKSSG
KALLRVSEEHAKTLLDIVSEQLDQDYTLQKHFAHLLASVWRSTSHYGHQKNPFHPRSGRF
RNYALRDSMRPQSQNMHFTNLSPMRRLVADALDSSENIPREERVSTFSERHDSRNFGNLA
ITLEFPSRRDDDESIPLPSVIPVSIADSESVPSEHIPMADSHHFRSSKDTVEWRFRDASR
VAVDGSVSLLTSALSPAEVKSRPPKSQTPGKQRLQNSELPSKSSKSKLRKTVVDSTEVLS
LLRNPNLHPPPMLPIDLTSRFDMVSSIPGVVLDDFLSTSLLEMGNETFDIVPHVYDPGFT
SGLEDCSLSRELTDIG
NT seq
5991 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgaaaggtccaaggtctaaaattgatcatgaatcgagggctaaacgccaaaag
ggacttgaaccgcccaaagaaccaaggcgtccgagaacacattgggaccatcttcttgaa
gagatggtatggttatcgaaggattttgaatccgaaagaaaatttaaattggctctggca
aagaaagttgccacaagggctagcaaaggcatggtggatcaggccacaagaggagaaaga
aaagtgaaggaggaagagctccggatgaaaaaagtagcactcaatatttccaaggacgtg
aagaaattctggacgaaaattgagaagctggtgctatacaagcatcggttagaggttgat
cagaagaagaaaaaagtacttgataaacagcttgaatttcttttagggcaaacagaaagg
tattcaacaatgctggcagagaaccttgttgattcgtcttcactgcagcaagtgccatca
tattcaaagcaagaacagccagccactgaatataaagaccagacttatgtcaatgggtgt
gctgaatcacataatgagtcccagtcaaataatttagaaactgatgaagactataagtct
gaaaatgagcctgaagatgacgagcatacgatcgaggaggatgaagctctcataactgaa
gatgaacgacgagaggaactagcagctttgcaaaatgaagtagatctaccgcttgaggag
ttgcttgcccgttatactggtggagaagttactacggagggtactccaggaaagaatgaa
gatgtagttgaactaaccaaggcacgggaggatgtcactcagtgtaatggaaatgacact
tctgagcataaatcaaaggaagagagtcgtccttgtgccgaaagtaatggcattttgtca
tttccaaaaaggcgtttagaaatcaaggaacattacgttcgaaaacgtaaacgtctccaa
gaggggaaaaagtatatggagttagacttgaacgatgaaaaagacgatggcgacttcgta
gctgcgaatggagaggataaggatgatgaaacaaccttattggaggaagaagaacttgcg
aaggctgaacatgatgattcagttgatgagattgcattattgcaaaaagagagtgagatt
ccaattgaggatttgcttgcaaggtataggcaggaccctgatacaaatagaagcacagat
gatggttccgagtctgaaggtgcatctgtgtctgaaaatttgtctaatacttctatacaa
gaagatctggaagttgattcatctgtggatatccagcatgtttccacaaatgatgttgat
gtaccacccgaaacccttactgaacacgaagaccagcaagataaactggttgatgaaggt
ggagagaatgaggacagaattgctgacgctgcagctgctgccaggtcagcacagccaaca
ggaaatacgtttttgacaaccaaagtccggacaaaattcccatttctgctgaagttctct
cttcgcgagtatcaacacattgggttggactggctagttacgatgtacgaaaaacgactt
aacgggattcttgcagatgaaatgggccttggaaaaaccatcatgacaattgcgttactt
gcccatctagcatgtgaaaagggtatatggggcccgcatcttattgttgtaccgacaagt
gtcatgctcaattgggaaaccgagtttctaaagtggtgtcctgcttttaaaatcttgact
tattttggaagtgcaaaagcccggaaacataagaggcaaggatggatgaagccacattcg
tttcatgtatgcatcacaacttacagacttgttattcaagattcaaaaatattcaagaga
aaaaaatggaaatatttgatattggatgaagctcatctcataaaaaactggaaatctcaa
agatggcaaacactgttgaacttcaataccaaaagacgtatccttttgaccggtactcct
cttcagaatgatcttatggagttatggtcgttgatgcattttttgatgccacatgttttt
cagtcgcatcaagaatttaaagattggttcagtaatccaatatcgggaatggttgatggt
caagagaaagtcaacaaagaggtaattgaccggttgcataatgtccttcgtccttttata
cttagaagactaaaacgggatgtggagaagcaattacctagtaagcacgagcatgttatt
tactgtagactctctaggagacaacggaatctgtacgaagatttcattgccagctcagaa
acacaagctactttagcaagttctagtttctttgggatgattagtgttataatgcaactt
agaaaggtttgcaaccatccagatctgtttgaaggtcgtcccattattagttcttttgac
atgagggggatagaagtacagttctgttcttccgtttgtaccattctagcccctagtcaa
ttttctgcggttgacctctgtggattagggtttgtgtttactcatcttgactatgacatg
acatcttgggagagtgatgaagttcaagctattgaaacaccttcaagattaatcgaggcc
cgtgtagaagagttagaagttaaaatcaagtctgggaaaaagtctaatggatttaatata
tttgaagaaattcagaaggcacttcaagaggatagacttaaagaaatgaaggaacgagcg
gcatcaattgcctggtggaattcattgaagtgtaaaagaaagcctgtgtactcaacggga
ttacgtgatatcgtctcctttcacaatcaaagtcaaaatcccgtttcttctaagcttgca
gagataattttgtctccggttgatcgattcaaaaagatggttgaccaggttgagagtttt
atgtttgcaatcccagcagcacgagctccacctcctgttggatggtgcagcaaatcgggc
tcttcggtgtttataaatcgagcttataaggataaatgttcaacacttttatcgccatta
ttaacacctattcgccctgctattgttagaagacaagtttattttcccgataggaggtta
atacagtttgattgcggaaagcttcaagagcttgcagttctgcttagacggttgaaatct
gaaggtcatcgagcgctaatcttcacccaaatgacaaaaatgctcgatgttttggaagct
tttataaatttatatggatacacgtatatgcggttagatgggtcaactcagccggaggaa
aggcaaaccctaatgcaaaggttcaacacgaatccgaagtatttccttttcatcttgtca
acacgtagtggcggtgtgggtatcaatcttgtaggtgcagatacagttatattttatgat
agtgattggaatccggctatggatcaacaagctcaagatcggtgtcatagaattggtcaa
acacgtgaagtacatatttatcgtttgattagtgaatgcacaattgaagagaatatctta
aaaaaggcaaaacagaaacgggctcttgatgatttggtgattcagagtggggagtataac
actgagtttttcaagaaacttgatccaatggaattgttttcaggccacggaacggtctct
gtaaacaacatgcagaaagacaaaactttgattaatggggctgatgtcaatcccccagta
tccaatgctgacgttgaggctgctttgaagcatgcagaagatgaagcggattacatggcg
ttaaaaaaagtcgagcaggaagaggccgttgaaaaccaagaatttacagaagaacccact
gggagattggaagatgatgagcttttgaatgatgaagatggtgatcatgctggattagtc
actgaaaacccacaaacaccaaaatggagcgaaccgaatgaagaagcgggtatgagtttg
gttaatattgacgatgatgatgtggacatgatggatgatgtcaaacagatggctgcagct
gctgctgcttcgggtcaggagatttcatcatttgagaatcaacttcggccaattgatcga
tacgctgtacggtttcttgagctgtgggacccgatcattgacaatgcattgatagaggta
caggatcggtttgaggaagcggaatgggagttggatcatatcgagaagttgaaggatgat
atggaagcagagattgatgatgacgaggaacctttagtttatgaaagctgggatacagag
tttgcaactaaggcataccaagagcaagttaaagtattgactgaacatcagttgatggaa
gaccgtgaaagggaagctagagagaagcttgctagagaaaaggaattggctagagagaag
gagctagctgagtatgaggcaatgaggattgaaactattgttaagaaacccaagtcgaag
aaaaaggcaaagaaaacaaagttcaaatctctgaaagaagaagctttatcttatgactca
aagactacaaatgtagtgtcaccaatagaatttgatgatgattttgatgacgagttgatg
tttgtgaagaaacgcaaaaaaccaatagaggaaagtgaagtcaagatatccaagaaatct
aaaaagagcaagaagaatactgaaccacgcttattagattttgattcaaattctatacct
gagcagcaagatgaaccaaaagatttgaaattaagtggaactagtttcaatcttgaagtg
gaacaaaagacaaacaacagaagcaaaatgggaataaaaatatcagtcatttcaatgcct
gtgaaacgggtaatgaccataaggcttgagaagctaaagaagggaagtatatggcctaat
gattgttttccgacacctgattcttggttatcatcagaggacgcgttgctttgtgctgtt
gtacatgaatatggtataaactggagtttggcaagtgatgtattgtatggaatgacagct
ggtgggttgtataggggaattgtccggcatcctgttcattgctgtgagaggtatcgggag
cttgttcaaagatacgtgctgtcaaattctgaaaatcttcataacgaaaaatcaagtggc
aaagctcttcttagagtaagcgaggagcatgcgaaaacattgttggatattgtgtcggaa
cagctggatcaagattacacccttcaaaaacattttgctcaccttcttgcatccgtgtgg
aggtcaacctctcattatggtcaccagaaaaacccatttcatccaagaagtggaaggttt
cggaactatgcgcttcgagactccatgagaccgcagtcacaaaatatgcacttcactaac
ctaagcccgatgagaagattagtagccgatgctctcgatagttctgagaatataccgaga
gaggaaagagtttccacttttagtgaacgacatgattctcgaaattttggaaatcttgcc
ataactttagagtttccttcacggagggatgatgatgaaagtattccattgccatcggtc
atacctgtgtcaatagctgactcggaatcagtgccatctgaacacatacccatggccgat
agtcatcattttaggtcatctaaggatactgttgaatggcgtttcagggatgcatcaaga
gttgctgttgatggcagtgtaagtttgctgacatcagcactctcaccagccgaagtcaag
tcccgtccacctaaatctcaaactccgggaaagcaaaggcttcaaaattctgaactacca
tcgaagtcgtctaaatccaaattaaggaaaactgttgtggattccaccgaagtactttct
ctacttcgtaaccccaatttgcatccacccccaatgctgcccatagatttgacttcgaga
tttgatatggtatcttctattcccggtgtcgtgctggatgattttttaagtacatctttg
ttggaaatgggcaacgagacctttgatatagtacctcatgtttatgaccctggtttcact
tcgggacttgaagattgttcgctatctcgggagttaactgacattggataa
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integrated database retrieval system
