Erigeron canadensis (horseweed): 122584410
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Entry
122584410 CDS
T07610
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122584410
Transcription machinery [BR:
ecad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
122584410
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Motif
Other DBs
NCBI-GeneID:
122584410
NCBI-ProteinID:
XP_043612526
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Position
1:48106688..48111611
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AA seq
522 aa
AA seq
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MGLGFRLNLKWGLSLQPHLSSSSSSPSSLPSTTYSSFKSKVINYDMARVALPMENETSYN
DGVSGNICSSTSRILDIDYSDIRNIERRVCNLLRDDTLTFLTSLQANRISQYRLLLENLV
VLEDTFADSDVLTLEKDILVQLEKLGALKSSSFETSKYPYSVKSIDKESIKPIVPSTRKV
KRRSQRDRISNKVNGVCTVEFHSHNQKNLRRVNSSSRRSSNSKGARLKITRNEAELSRGV
KMIANLEKIRTMLEEETGTVINFSSWASAAGVDKKVLLENLQFGWCCRDELLKSTRSLVI
YLAKNYNFQGIAFKDLIQAGNVGVLQGAERFDRTRGYKFSTYVQYWIKKSLLMLLSRHAR
EIRIPFTLSKAISKIQKAKKALYKGDGRCPDDLEIANFTGLSVAKIESASKCLRVVGSIN
QTNAKYWECTPDPTMMSPEEALIKEQMINEMYDRIEELDARERKVLVLRFGLKGYQRKTL
EEIGGFYGVSKEWIRRIERKALTKIKVDDEETLQCLRHYLYI
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgggttttagacttaacttgaaatggggtctctctcttcaacctcatctctct
tcttcttcttcatcaccttcatctttaccttcaactacatattcttcatttaaaagcaag
gttatcaattatgatatggcaagggtagcactcccaatggaaaatgaaacttcatacaat
gatggtgttagtggaaacatatgttcatctacttcccgaatcttggacattgattactcg
gatatccgcaatattgagcggagagtctgcaatttgttacgagatgatacattaacattc
cttacaagcttacaagcaaataggatttcacaataccggttactattggaaaatcttgtt
gttttggaggatacatttgcagattcggatgtgttaacactagaaaaagacatattggtt
caactagaaaagcttggagctttaaagtcttcttccttcgaaacatccaagtatccttat
tcagttaaatctatagataaagaatcaatcaaacctatagtgccttctacaagaaaggtt
aaaagaagatcacaaagagatagaatatcaaataaagtgaacggtgtttgtacagtggaa
tttcactcacataaccaaaaaaatttacgacgtgtaaacagttcatcaagaagatcatca
aattctaaaggtgcaagacttaagattaccaggaatgaggctgagctatcacgaggagtt
aagatgattgctaatttggagaaaattaggacgatgctagaagaagaaacggggactgtt
attaattttagtagttgggcatcagcagctggagttgacaagaaagtgttacttgaaaac
ttgcaatttggttggtgttgcagggatgagctattgaaaagtacacgatcattggttata
taccttgcaaagaattacaactttcaaggaatagccttcaaagatttaatccaggcaggt
aatgttggtgttcttcaaggtgcagaacggtttgaccgcacaagaggttacaaattctca
acttatgtacagtattggataaagaaatcattgttaatgttgctatcccgccatgctaga
gagatacgaattcctttcacgttgagcaaggctataagcaagatacagaaagctaaaaaa
gctctatataaaggtgatggaagatgcccagatgatcttgagattgcaaacttcactggt
ctttctgtagctaaaattgaatcagctagcaaatgccttagagttgtcggttccatcaat
caaacaaatgcaaagtattgggaatgtacgcctgatccaacaatgatgtctcctgaagaa
gctctcattaaggaacaaatgatcaatgaaatgtacgaccgtattgaagaattggatgca
agggagaggaaagtgttagttttaaggtttgggctcaaagggtaccagcgaaagacacta
gaggagattggtggattctatggtgtaagcaaggaatggattcgcagaatagaaaggaaa
gcattaacaaaaataaaagttgatgacgaagaaacgttacaatgtttaagacattatttg
tacatataa
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