KEGG   Erigeron canadensis (horseweed): 122584932
Entry
122584932         CDS       T07610                                 
Name
(RefSeq) HBS1-like protein isoform X1
  KO
K14416  elongation factor 1 alpha-like protein
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    122584932
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122584932
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     122584932
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 Zn_ribbon_RanBP Vps36-NZF-N zf-MIZ Kazal_2 zf-Sec23_Sec24
Other DBs
NCBI-GeneID: 122584932
NCBI-ProteinID: XP_043612948
LinkDB
Position
1:complement(2176657..2183675)
AA seq 737 aa
MPRKVTYGVDYDDDYDIYDDYPDDNYDYNYGNGADEHKSGWDSSEIKHESAIKQQSVQQN
VWRCPICTFDNEEYMSACDICGVLRNPLARSSNNGQSSTVGDICMKSGASVMAKSLFASL
SYCSSNGAVNSQPQKDSFLTKEGKLSHLHGNIRRQFHDLHNTFISEKYHKVNIARFKFDV
PSPDDLVSMGMRSLRIGSKVATNLNKPSTSDPPSSKAINNTNLKSSAKHSNDSAPLMLKD
KIEHVEENNDSIISEAQSHMLSSEMNSMTVSAEPGNSIISRKEKIVPRSQYKPDKWMLLD
QVKDHLSQLNLAIVGHVDSGKSTLSGRLLHLLGQISQKQMHKYEKEAKSQGKGSFAYAWA
LDESAEERERGITMTVAVAYFDSNKYHVVILDSPGHKDFVPNMISGATQADAAILVIDAS
LGAFEAGIDSAGGQTREHAQLIRSFGVDQIIVAVNKMDVVQYSKERFNAIKLQLGTFLRS
CNFRDSSVSWIPLSAMENQNLVLPASDARLSWYKGPSLLEAIDALQPPAREYSKPLLMPI
CDVIKLQSQGQVSACGKLEAGALRNGSKVLVLPSGDIGTVRSLERDSQTCDIARAGDNVA
VSLQGIDANCVISGGVLCHPDFPVAITNHLEVKLLVLDVQMPILLGSQFEFYIHHAKQDG
RVSRIVSLLDPKTGKETKKSPRLLLAKQSAIVEVVLKGEVCVDEFSSSRALGRVFLRSSG
TTVAVGVVSRVITGGQN
NT seq 2214 nt   +upstreamnt  +downstreamnt
atgcctcgcaaagtaacttatggagttgattatgatgatgactacgatatttatgatgat
taccctgatgacaattatgattataattatggtaatggtgcggatgaacataaatctggt
tgggactcttctgaaataaaacatgagagcgcaataaaacaacaaagtgtacagcaaaat
gtatggcgctgccccatatgtacatttgataacgaggaatacatgtctgcatgtgatatt
tgtggtgtacttcgcaacccattggccaggagctctaacaatggtcaatctagtacagtt
ggtgatatatgcatgaaatctggagcatcggtgatggcaaagtccctttttgcatcattg
tcatattgttcatcaaatggagctgtaaattctcaaccacagaaagattcttttttaaca
aaggagggcaaattatctcacttgcatggaaatatacgaagacagttccatgatttacat
aacacctttatctctgaaaaatatcacaaggttaacatagcccgtttcaagtttgatgtc
ccatctccagatgatttggtttctatgggaatgcgatctttgagaatcggttccaaagtg
gctacaaacttgaacaaaccatcaacttctgatcctccttccagcaaagcaataaacaat
accaacttaaagtcaagtgctaagcattctaacgactcagcacctttgatgttaaaggat
aaaattgaacacgtggaggaaaacaatgactcaatcatatctgaggcacaatcacacatg
ctttccagtgaaatgaacagtatgaccgtgagtgcagaacctggtaattccataatctcg
aggaaggagaaaatagtacctcgttcacagtataaacctgataagtggatgctactagac
caagtcaaagatcatttgagtcagctgaatcttgctatcgttggccatgtggattctgga
aagtcgacactctctggaaggctgctacaccttttgggacagatatctcagaaacagatg
cacaaatatgaaaaggaggctaaatcacaggggaaaggttcttttgcatatgcatgggca
ttggatgagagtgcagaagaaagagaaagggggataactatgacagtggcagttgcctat
ttcgactccaataaatatcatgttgtgatacttgactctccgggccataaagattttgtt
ccaaacatgatatctggggcaacacaagcagatgcagccattcttgttattgacgcttca
cttggtgcatttgaagcgggtattgatagtgcgggtggtcaaacacgggagcatgctcag
ctaataagaagttttggggttgatcaaataattgtggccgttaataaaatggatgtggtt
cagtattcaaaggaacgtttcaatgccatcaagttgcaacttggaacatttctgcggtcc
tgtaattttagagactcttctgtgtcatggattcccttgagtgcgatggagaaccaaaat
ttggtactacccgcttctgatgcacggttatcatggtacaagggccctagtctgctagaa
gctatagatgctcttcaacctcctgctagagaatactcgaagcctctactaatgcccata
tgtgatgttatcaagcttcaatctcaaggtcaggtatctgcatgtgggaagttagaggct
ggagctcttcgtaatggaagcaaggttcttgttctgccttcaggagacataggaactgtg
cgctcattggaacgtgattctcagacatgtgacattgcaagagcaggggacaatgtggct
gttagtttacaaggtattgatgcaaattgtgtgatttctggtggtgtgttgtgtcaccca
gatttcccagtcgcaatcacaaatcatttggaggtgaagctcttggttttggatgttcaa
atgccaattttgctcggctcacagttcgagttttatatacaccatgccaagcaagacgga
agggtttcgaggattgtgtcgttgctcgatcccaagacgggtaaagagacaaagaagtca
ccacgccttttgttagccaagcaaagtgccatagttgaggtggtgctgaagggagaggtt
tgtgtagatgaattttcaagtagcagagctcttgggagggtattcttaagatcatcaggg
acaactgttgccgttggtgtggtaagccgagtaataacaggcggtcagaactaa

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