Erigeron canadensis (horseweed): 122585132
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Entry
122585132 CDS
T07610
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122585132
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122585132
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
NCH4
Motif
Other DBs
NCBI-GeneID:
122585132
NCBI-ProteinID:
XP_043613171
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Position
1:complement(53801316..53805472)
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AA seq
475 aa
AA seq
DB search
MAQIRACIVVLYTILLVKIAQQAAGASMAFKNLTLPGQHPSPDFVAQELQRRVNVSITRR
EMLSYTNVDSATSCLTGNPIDDCWRCDPNWHLNRQRLADCGIGFGQYALGGKGGRYYVVT
DSSDHDAVNPRPGTLRWAVIQTEPLWIVFPTNMHIVLKQELIFNSFKTLDGRGANVHITG
GGCITLQYITNVIIHNIHIHHCYQSGNTDVRSSPTHYGYRTKSDGDGISIFGSRDLWIDH
CSLSHCKDGLIDAVMGSTGITISNNFFSHHDEVMLLGHSDDYLPDSGMQVTIAFNHFGEK
LVQRMPRCRRGYIHVVNNVYSRWEMYAIGGSGSPTINSQGNRYTAPANPNAKEVTKRVET
AQEHWRGWNWRSEGDILVNGAFFVASGQGLELKYEKAYSVEPKSAALIDQLTMNSGVLGS
RSNKLGKWADGDGNIEDGIDDSENDYGEDSDGSSRPNSMTLISSLFMVLLSLMLL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaataagagcctgcattgtggtattgtacactattttactagtgaaaatagct
caacaagctgcaggtgcttcaatggctttcaagaatcttactctaccaggccaacaccct
tcacctgactttgttgctcaggaacttcaaaggagagtaaatgtctccattacaagaaga
gaaatgctatcatacaccaacgttgactcagcaacgtcctgtttgactggtaacccaatt
gacgactgctggcggtgtgaccccaactggcaccttaacaggcaacgcctcgctgactgc
ggcattggctttggccagtacgcattaggtggcaaagggggccgctactacgttgtcaca
gattcttctgaccacgacgcggtgaacccacgtcctggcactcttcggtgggcggttatc
caaacggaacccttatggattgttttccctacaaacatgcacattgtgctcaaacaagag
ctcattttcaacagctttaaaacgttagatgggcgcggtgctaatgtgcatataactggg
ggcgggtgtattacattacaatatataactaatgttattattcataatattcatatacat
cattgttaccagtctgggaataccgatgttcgatctagcccaactcattatgggtatcga
acgaaatctgatggtgatgggatatcgatatttgggtctcgtgatctttggatcgatcat
tgctcgttgtcgcattgtaaagacgggctgatagatgcagtcatggggtctactggaata
acaatatcgaataatttcttttcacaccatgatgaggtgatgttgttggggcatagtgat
gattacttgccagattctggcatgcaggtgacaattgccttcaaccactttggagaaaag
ttggtgcagagaatgccacgatgccgcagagggtatatacatgttgttaacaacgtgtat
tcgcggtgggagatgtatgcaattggagggagtggaagtccaaccattaatagtcaagga
aaccggtatactgctcctgccaatcctaatgccaaggaggtgacaaagagggtggaaaca
gcccaagagcattggagggggtggaattggaggagtgaaggcgatattctggtgaatgga
gctttctttgtagcgtccggtcaaggtttagagctcaagtacgagaaggcgtacagtgtg
gagcctaaatcagcggcattgatcgatcaactcacaatgaactctggtgtgcttggtagc
aggagcaataagcttgggaagtgggcagatggtgatggtaatattgaagatggtatagac
gacagtgaaaacgactatggtgaagacagtgatgggtcttcccggccgaattctatgact
ttgatttcatctttgtttatggttttgttatcgttgatgttattgtga
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