Erigeron canadensis (horseweed): 122585247
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Entry
122585247 CDS
T07610
Name
(RefSeq) elongator complex protein 1
KO
K11373
elongator complex protein 1
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecad03016
]
122585247
Transfer RNA biogenesis [BR:
ecad03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
122585247
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ELP1_1st
A-sol_ELP1
Beta-prop_ELP1_2nd
TPR_ELP1
HB_ELP1
Beta-prop_WDR19_1st
WD40_CDC20-Fz
TPR_GEMI5
Beta-prop_HPS5
DUF2982
Motif
Other DBs
NCBI-GeneID:
122585247
NCBI-ProteinID:
XP_043613300
LinkDB
All DBs
Position
1:29896534..29903207
Genome browser
AA seq
1285 aa
AA seq
DB search
MKNLKFSWERSSKVELQSKNEVIRCSAFDIEQNRFFFASSANFIYTIHLSSSSSQNEESW
GKRSPGPLVEHVDLDAGDSITSLEYIMEKESLIIGTSSGILLLYNVDDSVMEVVGRVEGG
VKSISPSPDGDLLCIISGIGQMLVMTHDWDLLYETALDEPVEDADVRDGSLLSECSPGSP
ATWRGDGKYFATVISVQNSLHKKLKIWERDTGNLHSVSEAKAFTGEVVEWMPSGAKIATV
CGQKIVFFERNGLERSSFSGSDGLDATIENLKWNCNSDLLAAVVRTKTYDSVKVWSFSNN
HWYLKQEIRCSRQDGVKFIWDPVKPLQLISWTLEGLVKVYNFIWITAVTENSVALVVDGS
KILVTPLYLSLLPPPMYLFDLQFPYSVREMAFRCKNSKNRLAVSLADGSLAVVEFPSLDT
WLDLEGQTFCVELCLFEGLTSFVHLTWLDSHVLLGFSPHGHLQELELVCSENQILGVVAC
SGFDAKLTNELSIERLVIGIATNPVKMRSAFVQLDDGSIFEYTSKLDTALGSFCEHNNLR
FSSACPWMSVVPVEDFGLSKSSLIFGLDDNNRLHVSQNVVCNNCSSFSFYSNSTNQVMTH
LILATKQDFLYVVEIRDILLGETDAKHGNFVPVVITRKNADEGKKFMQIWEKGSKILGVV
HGDESAVIIQTTRGNLESIYPRKLVLESIVNALVQQRFRDSLLMVRRHRIDFNVIVDYGG
WQAFLQMATEFVRQADNLSYITEFVCSLKNENIMDTLYKNYISYPIAEIGIESIDSKVNS
VLLAVRKALEEQTVESPARELCILTTLARSDPPLLEEALGRVKGIREMELSDSDDPKRKL
FPSAEESLKHLLWLSESEAVFEAALGLYDLNLAAIVALNSQQDPKEFLPFLQELEVLPSL
IMRYRIDLKLKRFEKALQHIVAAGDGYFQDCISLIKNNPELFSVALQLITDPTKRNQVLE
AWGDHLNDIKCFEDAATAYLCCSHLEKALKAYRASNNWSGVLTVAGVMKLQKEDLMQMAH
ELCEELQTIGKPSEAAKIAFDYCNDVKNGISLLISAREWEEALRIALMHRREDLISDVKI
GAGECAAIMIVEYEEGLEKIGKYLARYLAVRQRRLLMAAKLQEDERSINELDDDTVSEAS
SSLSGMSAYTTGTRKSSAASMSSSKRGIRRQKKRGKIRAGSPDEETALVEHLKGMSLAAG
AARELKSLLACLVMIGKEDIARKLQRVGENFQLSQIAAVKVAEDAMSCDIVDEHKFVLEV
YIKKIRKELLQSEMFSWQSKVFVAS
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatctgaagttttcatgggaacggtcatccaaagtggagttacaatcaaagaat
gaagtcattcgttgctccgctttcgatatcgaacagaatcgattcttcttcgcttcgtct
gccaacttcatttacaccattcatctttcttcttcttcatctcaaaatgaagaatcgtgg
gggaaacggtcaccaggtccgttggttgagcatgttgatcttgatgcaggcgactctatt
acttctttagagtacataatggagaaagaatcactcattattggaacttccagcggtatt
ttattactatataatgtggatgatagcgtaatggaggttgttggcagagtggaaggtgga
gttaagtcgatatcaccgagtccagatggagatttgctctgtattatctctggtattggc
caaatgttggtcatgactcatgactgggacttgttgtatgagaccgctcttgatgaacct
gttgaagatgctgacgtacgtgatggaagtcttctctcggaatgttcacctggaagtcct
gctacctggcgaggtgatgggaaatattttgctacagtaatctcggtgcagaattctttg
cataagaagcttaaaatatgggaacgagatacgggtaacttgcactccgtttcagaagcg
aaggcttttacgggagaagttgttgaatggatgccatctggagcaaaaattgctactgtt
tgtggtcagaaaatagttttctttgagagaaatgggttagaaaggagctcatttagtgga
agtgacggactagatgcgacaatcgagaatctaaaatggaactgtaattcagatcttctt
gcagctgttgttagaaccaaaacctatgattctgttaaagtatggtctttcagcaacaat
cattggtatttaaaacaggaaatcaggtgctcgcggcaggatggagtgaaatttatttgg
gacccagtaaagcctttacaattaattagttggactcttgaaggcctggtcaaagtttac
aattttatctggattacagctgttaccgagaactctgtagcattagttgttgatggttca
aagattttagtaacacccctttatttatctttattgccacctcctatgtatctttttgac
ctacagtttccatattctgttagagaaatggcttttaggtgcaagaattctaagaatagg
ttagctgtatctttggcggatgggagtttagcggttgtagagtttcctagccttgacacc
tggctagatctagaaggccaaacattttgtgttgagctgtgtctttttgaaggtcttaca
tcctttgtacatctcacatggttggactcacatgtacttcttggttttagtcctcatggt
catctgcaggaacttgaacttgtatgctctgagaatcaaattctgggtgtagtggcatgc
tcgggatttgatgctaaattaaccaatgaactctctattgagaggttggtgattgggatc
gctactaaccctgttaaaatgcgttcagcttttgttcaattagatgatgggagtatcttt
gagtacacgtcgaaattagatactgcattgggttctttttgtgagcacaacaatctgcgg
ttttcatcagcttgcccctggatgagtgtggttcctgttgaagattttgggctatcaaag
tcatctttgatatttgggctcgatgacaacaataggctgcatgtgagccagaatgttgta
tgtaataactgcagcagcttctcattctattcgaattccaccaatcaagtgatgacacat
ctaatccttgcaactaaacaagactttctctatgttgttgagatccgtgatattttgctt
ggtgaaacggatgctaagcatggcaactttgtaccagttgtaataaccagaaagaatgca
gacgaaggaaagaagtttatgcaaatatgggaaaaaggctccaaaatcttgggggttgta
catggagatgaatctgccgttataatacaaacgacccgtggaaacttagaaagcatttat
ccaagaaagttggtacttgaatcgattgttaatgctttggtccagcaacgtttcagggat
tccctactcatggtaaggcgacataggatagattttaatgttatcgtcgattatgggggc
tggcaagcctttttacaaatggctacagagtttgtcaggcaggctgataatctaagttac
atcactgagtttgtatgttctttaaagaacgaaaatatcatggatactttgtataagaat
tatatatcttacccaattgcagaaattggtatagaatcaattgatagcaaggttaactct
gtcctcctggctgtgagaaaagctcttgaggagcaaacagtggaaagcccggctcgagag
ctttgcattttaaccactttggcccgaagcgacccaccattacttgaagaagctttagga
cgggtgaaaggtatccgggagatggagttatcagatagcgatgacccaaagagaaagctt
ttcccgtctgctgaagaatctttgaaacatttgttgtggctctctgagagtgaagcggtt
tttgaagctgctctcggtctttatgacttgaatcttgcagctattgttgcattgaactca
caacaggacccgaaggagtttctaccatttcttcaggaacttgaagttttgccaagtctt
ataatgaggtacagaattgacctaaaactaaagagatttgagaaggcactccaacacatt
gttgctgcaggagacggttattttcaagattgtattagtctcattaaaaataatcccgaa
cttttttctgtggcacttcagttgataacagatcccaccaagagaaatcaagtacttgag
gcgtggggggatcatttaaatgatataaaatgctttgaggatgctgctacagcatattta
tgttgttctcatttagagaaagctttgaaggcttaccgggcttctaataattggagtggg
gtgcttactgttgcgggcgttatgaaattacaaaaagaagatcttatgcaaatggcacac
gagctttgtgaagaacttcaaacgattgggaagccaagcgaagctgccaaaattgctttt
gattattgtaatgatgttaaaaacgggataagtctcttaatcagtgcacgggaatgggag
gaggctttgaggattgctttaatgcacaggcgggaggacctgatttcagatgtgaaaatt
ggagctggtgaatgcgctgccattatgatagtggaatatgaagaagggttggagaaaatt
ggtaagtacttagcacggtatttggcagtccgacagcggcggttgttgatggcagctaag
cttcaggaagatgagagatcaataaatgaactggatgatgacacggtttcggaagctagc
agtagtttgagtggaatgagtgcgtacactactgggacaagaaaaagttctgctgcttcc
atgagttcaagcaaaagaggaataagacgccaaaagaaaagagggaaaatccgtgctggc
agccccgatgaggaaacggcattagtagagcatctgaaggggatgtcccttgctgctgga
gcggcacgtgagctcaaatctttgctggcttgccttgtgatgattgggaaggaagatatt
gcaagaaaattgcagcgagttggcgaaaactttcaattatctcaaattgcagcagtaaag
gtggctgaagatgcaatgtcatgtgatatagtagacgagcataagtttgttttggaggtg
tacatcaagaagataaggaaggaattgctgcagtctgagatgttctcttggcagtccaaa
gtttttgttgcttcttag
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