Erigeron canadensis (horseweed): 122585591
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Entry
122585591 CDS
T07610
Name
(RefSeq) nuclear pore complex protein NUP85
KO
K14304
nuclear pore complex protein Nup85
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122585591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122585591
03036 Chromosome and associated proteins [BR:
ecad03036
]
122585591
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122585591
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
122585591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
Antimicrobial10
Motif
Other DBs
NCBI-GeneID:
122585591
NCBI-ProteinID:
XP_043613650
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Position
1:52806746..52813482
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AA seq
733 aa
AA seq
DB search
MPGLPTPPTGDSSAAEIIPYSPNTDTTPTLYTLHHGFTTPPRISISWSHGNSLRLSLFRS
PENPNNDNNDNNTDEEEVEVGGKVVELKLTGEEDYNKNNGEDSARWWRKIVYGSVSPFAH
LQNKKNAMAALSDLRHSVPYDGEWSKYVLEYSKEINSLLGNRKSSTTSLIEDPKTVLQNV
EEPSALKAAWELLQIFYADKQSQPWILEQLVDWLSNYDSLFSGQMPSVHLRLAEFQADLL
NIQAVENEPAYWQAISSALAVGWLDIVVKLLRLHGSYQLNQLGTRETENGLVEAVAVLVS
KMPRIRADLPDGKLGECYYNKSDFMRAWEKWRVQITKLDCSAFWLQCNHHQTKVNLKSLL
QILLGNPSILSSATYHWVELYIAHFLYIRPFTSGFESMNALAQKCIQLKPTTNPHKLMRL
LIGILGENTEVVLAECSRSFGPWMIAHATELVTAGSIEAEILIKEERDNLGGISIEESHR
LVYAQVLSSHALTWQIAPIYLISCMKHGVGLLEILLYKQPVYHSQVLLKNIEICRMYDLD
NVSSNAMKIAGVHHWKHGRKGAGVFWLQQAQDEVHLNQIAQKLFDFVGKSISDESFEQWE
GLIELLGSESRTAGGLEFLHKYRDFKRSLQQVQDGTFTDAARKASEALISLMKNPSTPQR
FWLPLLFDSLKLLNWLERPLLNVSQTNLLLNKLQELSMAKLRPDFVEVGLPPQALSSVRL
ALATNLGRAMLEE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccttccaacaccgcccaccggcgattcctccgccgctgaaatcattccttat
tccccaaacacagacaccactcctacactctacactctccaccacggcttcacaaccccc
cctcgcatctccatctcatggtcccacggtaactccctccgactttctctcttccgctca
ccagaaaacccgaataatgataataatgataataatactgatgaagaagaagttgaagtt
ggcggaaaagtagttgagttgaaactaacaggtgaagaagattataataaaaataatggc
gaggatagtgcacggtggtggcgtaagattgtttatggatcggtttctccgtttgcgcat
ttgcagaacaagaagaatgccatggcggcgttatccgatttacgacattccgttccctat
gacggagagtggtcaaagtatgttctcgagtatagcaaagaaataaattctcttttaggg
aacaggaaatctagtactacatcgttaattgaagatccaaagacagtattacagaatgtt
gaggagccaagcgctttgaaagctgcatgggagttgctgcaaatattttatgctgataaa
caatctcagccttggatccttgaacagcttgttgattggttatccaattatgatagtcta
ttctcgggacaaatgccaagtgttcatttaagactggcggagtttcaagcagaccttctc
aatatacaggcagttgaaaatgagcctgcatattggcaagcaatttcttcagcacttgca
gttggctggctagacattgtggttaagctattgcgtttacatggatcttatcagcttaat
caactagggactcgtgagacagagaacggacttgtagaagcagttgcagttttagtctca
aaaatgccacgcatccgtgcggatttaccagatgggaagttaggtgaatgctattataac
aagtctgattttatgagggcatgggagaaatggcgagtacaaataaccaagctggactgc
agtgcattctggcttcaatgcaatcaccatcaaactaaagtaaatttaaagagtttgctt
caaatcttgttgggaaaccccagtattctctctagtgccacttatcattgggtagagcta
tatattgcccactttctatacatcagacccttcacttcgggatttgaaagcatgaatgcc
ttagctcaaaaatgcatccagttaaaacctacgactaatccccataagctaatgagactg
ctaattggtattctgggagaaaacacagaggttgtattggctgagtgctcaagatcattt
ggtccctggatgattgcacatgctacagagttggtaacagcggggagtattgaggcagaa
attcttataaaagaagaacgtgataatttaggaggaataagcattgaggaatcacatcga
cttgtttatgctcaagtgttatcttctcatgccttaacttggcaaattgctccaatctat
ctaatatcttgtatgaaacatggagttggcttgttggaaatcttgttgtacaagcagcct
gtatatcatagtcaagttcttctcaagaacattgagatatgtcgtatgtatgaccttgat
aatgtgagctccaatgctatgaagattgctggagtgcatcactggaagcatggcaggaaa
ggagctggagtcttttggttacaacaagctcaggatgaagtacatctcaatcaaattgct
caaaagttgttcgactttgttgggaagtcaatctccgatgagagttttgagcaatgggaa
ggattaattgaattattgggctccgaatctagaactgcaggcggtcttgagttccttcac
aagtatcgggacttcaaaagatctttgcagcaggtccaagatggcacttttactgatgct
gcccgaaaagctagtgaagctcttatatcgcttatgaaaaatccttctacgcctcaacga
ttttggctgcctcttttgtttgattcattgaagttgctcaactggctggagcgtcctctg
ctaaatgtatctcagactaatctgctattgaataaattgcaagaattgtctatggcaaag
ctgcggcctgattttgttgaggtagggctgccgccacaggccctgagctctgtcaggctg
gctcttgccactaatttagggcgtgctatgcttgaggaatga
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