Erigeron canadensis (horseweed): 122586015
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Entry
122586015 CDS
T07610
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03030
DNA replication
ecad03410
Base excision repair
ecad03420
Nucleotide excision repair
ecad03430
Mismatch repair
ecad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122586015
03410 Base excision repair
122586015
03420 Nucleotide excision repair
122586015
03430 Mismatch repair
122586015
03440 Homologous recombination
122586015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecad03032
]
122586015
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122586015
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
122586015
DNA replication proteins [BR:
ecad03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
122586015
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
122586015
MMR (mismatch excision repair)
DNA polymerase delta complex
122586015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
REV3_N
Motif
Other DBs
NCBI-GeneID:
122586015
NCBI-ProteinID:
XP_043614066
LinkDB
All DBs
Position
1:complement(44440924..44455265)
Genome browser
AA seq
1084 aa
AA seq
DB search
MSSNKKRPAQQPPVTPQPPPKHHAAAVEDDYIDEDVFIDEALLDEDELILRDMQDREALA
NRLNKWKRPPLRPGYISQSENIVFQQLEIDCVSKEEGNKGMIPNSSGPATIIRIFGVTTE
GNSVCCNVHGFEPYFYISCLPGMGPDDISRFHQVLEGRMREANRNKYPKFILRMELVQKK
SIMYYQQHSSQPFLKIVVALPSMVATCRGILDKGVQLDGFGMKSFMTYESNVTFVLRFMV
DCKISGGNWIEIPAHKYKKTAKSLSYSQLEFDCLYSDLISHVPEGEFSKMAPFRILSFDI
ECAGRKGIFPTAKVDPVIQIANLVTLQGEEQPFVRNVMTLKSCSPIVGVDVMSFDTEREF
LLAWRDFVREIDPDILIGYNICNFDFPYLIERAETLGITEFPILGRIRTTRARVKDTNFS
SRQYGTRDSKEVLLEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLNEQKEDVHHSIISDL
QNGNPETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISYLLARGQSIKVLS
QLLRKAKEKNLVLPNVKQAGSEQGTYEGATVLEPRPGFYEKPIATLDFASLYPSIMMAYN
LCYCTLVTNEDVRKLNLPPECVNKTPSGETFVKSNLQKGILPEILEELLAARRRAKADLK
EAKDPLVKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKRLV
EDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPTVDEAMKLGREAADYISGTFIKPIKLEFE
KVYFPYLLISKKRYAGLYWTNPEKYDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRD
IPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGGDYEVKTAHVELAERMKKRDAATAP
HVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPIMKN
ASRELLHGSHTRAISISTPSTGGIMKFAKKQLSCVGCKALISNKDQTLCSHCKGREAELY
CKSIANVSELEKLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKVQLD
RWNF
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaacaagaagcgaccggcacaacagccaccagtgacaccgcagccaccgccg
aagcaccacgcggctgcggtagaagacgattacatcgacgaagatgttttcattgacgaa
gccctacttgatgaagatgaactcattcttcgcgatatgcaagatcgtgaagcgctcgcc
aatcgcctcaataaatggaagcgcccgcctttacgccccggttatatctctcagtccgag
aatatagtttttcaacaattggagattgattgtgtgagcaaggaggagggcaacaaaggg
atgattcctaattcatctggtcctgctactattatcagaattttcggtgttactactgaa
gggaatagtgtatgctgtaatgttcatggatttgaaccgtatttctatattagctgcctt
ccagggatgggccctgatgacatatctcgctttcatcaagttcttgaggggagaatgagg
gaagccaacaggaataagtatcccaagttcattcttcgtatggagctagttcagaaaaag
agtatcatgtactatcagcagcatagttctcagccttttcttaaaatagttgttgcattg
ccgtcaatggttgctacttgccgtggaattcttgacaaaggtgtacaacttgacggtttt
ggtatgaaaagcttcatgacatatgagagtaatgttacttttgttctccgctttatggtt
gattgcaaaatcagtggtggcaattggattgaaattccagctcacaaatacaagaagaca
gcaaagagtctttcatactctcagctagagtttgattgtctttattcagatctgattagc
catgttccagaaggagaattttcaaaaatggctccatttcgcatattgagttttgacatc
gagtgtgctggccggaagggcatttttcctacggctaaagttgatcctgttattcagatc
gcaaacctggtcacgctgcagggagaggaacagccgtttgtgagaaatgttatgacctta
aagtcatgttctccaatagttggtgttgatgtgatgtcatttgacacagaaagagaattt
ttgctggcttggagggattttgttcgcgagattgatccagatatcctaattggttataac
atttgcaactttgactttccctatcttattgagagggcagaaacattagggataactgaa
tttcctatactgggtcgcatcagaactaccagggctcgcgtgaaggatacaaatttttcg
tcaagacaatatggtacaagggatagtaaagaagttctgctggaagggagagttcagttt
gatttacttcaggctatgcaaagggattataaattaagttcatactcgctaaattctgtt
tcagctcattttcttaatgagcagaaagaggatgttcatcattcaattatatctgacctt
cagaatggcaatcctgagacaagacggagattggctgtatattgtcttaaggatgcttat
ctccctcaacggttgttggacaagttaatgtacatctacaattatgtggagatggctcgt
gtcactggtgttcccatatcatatcttcttgctagaggacagagcatcaaggtactttct
caacttctaaggaaagcaaaagagaagaatctagtgcttcccaatgtgaagcaagcagga
tctgaacaagggacatatgaaggtgcaactgttttggaacccagaccaggattttatgag
aagccaattgctacattggattttgcatctttatatccgtcaatcatgatggcatataac
ttatgctactgcactctagtgactaatgaagatgttcggaaacttaaccttccacctgaa
tgcgtcaacaaaactccctcgggtgaaacatttgtcaaatcaaatttgcagaagggtata
cttccagaaattcttgaagaactcttagctgctcgtaggagggctaaagcagatttaaaa
gaggccaaggatccactagtgaaggctgttttggatggtcgacagctggctttgaagatt
agtgcaaattcggtctatgggtttacaggagctaccattggccaattaccgtgtttagag
atatcctcaagtgtcacgagctatggccgacagatgattgaacacacaaaaagacttgtc
gaagataaattcacgacgcttgggggatatgaacataatgctgaggtgatatatggggat
acagattcagttatggttcaatttggtgtgcccactgtggatgaagccatgaaactaggt
agggaagctgctgattacattagtgggactttcatcaagcctatcaaactagaatttgaa
aaggtttatttcccgtatctactgatcagcaaaaaaaggtatgctggtctctattggaca
aatccagagaaatatgacaagatggatacaaagggtattgaaacagttcgaagggacaac
tgtctattagtaaaaaatctggtgaacgagtgtcttcataaaatactaatagacagagac
ataccaggagccgttcagtatgtcaagaataccatttcggatctgcttatgaatcgcatg
gatttatctcttctggttattacgaagggactgacaaaaacaggaggggattatgaagtc
aagacagcacatgttgaactcgcagagagaatgaaaaagcgagatgcagctacggctcca
catgttggtgatagagtaccatatgtcattatcaaagctgccaaaggtgctaaggcgtat
gagaagtctgaggacccaatatatgttttggaaaacaatatacccatagatcctcaatac
taccttgaaaaccagataagcaagccactgttgaggatatttgaacccatcatgaagaat
gctagtagagaacttctccatggaagtcacactagagctatttccatctctaccccatca
actggcgggataatgaagtttgcaaagaagcaactaagctgtgttggctgcaaagcttta
atcagtaataaagatcagacactttgctcacattgcaagggaagagaagctgaactttat
tgtaaatccatagctaatgtatccgagttagagaagcttttcggtaggttatggacacag
tgccaagagtgccaaggatctcttcatcaagatgtcttatgcacaagtcgggattgccca
atattctatcggaggaagaaagcacagaaggacatggctgaagccaaagtccagttagat
cgatggaacttttag
DBGET
integrated database retrieval system
