Erigeron canadensis (horseweed): 122586128
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Entry
122586128 CDS
T07610
Name
(RefSeq) phytochrome B-like
KO
K12121
phytochrome B
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122586128
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_9
PAS_4
PAS_3
PAS_8
Motif
Other DBs
NCBI-GeneID:
122586128
NCBI-ProteinID:
XP_043614170
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Position
1:complement(51629214..51635400)
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AA seq
1130 aa
AA seq
DB search
MASGSRTSSKLHRHNYNNNNQKAQQPSSSTSNYNKVVDSVSKATAQFTVDARLHAVFEQS
GGSGKSFDYSKSLQTTTQSSIPEQQITAYLSRIQRGGHIQPFGCMIAIDDSSFKVIAFSE
NARERLGLAPQSVPSIEKQEILTIGTDVKTLFTPTSSVLLERAFRAREITLLNPLWVHSK
NSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISKLQALPGGDIKL
LCDTVVQNVRELTGYDRVMVYKFHEDEHGEVVAECKRADLDPYIGLHYPATDIPQASRFL
FRQNRVRMIVDCHTNPVRVIQDEALMQPLSLVGSTLRAPHGCHAQYMANMGSIASLAMAV
IINGPDDENTGQRASMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQ
MSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMDLIKCDGAALYNQGKYYPLGVTPTEAQ
IKDIIDWLTAVHLDSTGLSTDSLADAGYPGATALGDAVCGMAVAYITSKDILFWFRSNTA
KEIKWGGAKHHPEDKDDGQRMHPRSSFNAFLEVVKSRSLPWENAEMDAIHSLQLILRDSF
KDVDENNSKAVVNAHYEDMELQGMDELSSVAREMVRLIETATAPILAVDVEGRINGWNAK
VAELTGLSVENAMGKSLVQDLVYKESEETVAKLLDRALRGEEDKNVEIKLKTFNSSMEET
AVFVVVNACSSKDYTDNIVGVCFVGQDVTRQKVVMDKFIQIQGDYKAIVQNPSALIPPIF
ASDENTCCSEWNIAMEKLTGWTRAEILGKTLVGEIFGSVCRLKGPDSLTKFMIILHNAIG
GQDTEKYPFSFFDKNGKYVQVLLTANKRMNVAGEVIGAFCFLQIASPELQQALKVQLQQE
KKCHERMKELAYICHEIKNPLSGIRFANSLLEASDLTEDQKQLLETSAACEKQMFKIIKD
VDKENIQEGSLEMEKHEFVLGNVINAVVSQVMLLLQHRGLQLIRDIPEEVKTLTIYGDQA
RMQQVLTDFLLNMARHSPSPGGWVELQVRPTLKQTSDGNVVHVAFRIMSPGEGLSPELVQ
DMFHSSEWSSEEGLGLSMCRKILTLMNGEVQYIRESERCYFFVVLEVPPH
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaggaagcagaacaagctcaaaacttcataggcataattataataacaataac
caaaaagcccaacaaccatcatcatcaacttcaaactacaacaaggtagttgactcagta
agcaaagcaactgcacagtttacagttgatgcaagattgcatgctgtatttgaacaatct
ggtggctctggtaagtcttttgattattcaaagtcacttcaaactacaacacagtcatca
attcctgaacaacaaataactgcttatttgtcaagaattcaaagaggtggtcacattcag
ccatttggttgcatgattgctatcgatgattcgagttttaaagtcattgcctttagtgag
aatgctagagaaagattaggcttagctccccaatctgtaccaagtatagaaaaacaagaa
atcttgacaattggaacagatgttaagacccttttcacccctactagttctgtgttgcta
gaacgagcttttcgggctagagagattactttactgaaccctctttgggttcattccaag
aattcagggaaaccgttttatgcgatcttgcataggattgatgtagggattgtgattgat
ttagagcctgctaggactgaagatccggctttgtctattgctggggcggttcagtctcaa
aagctggctgttcgggccatttcaaagttgcaggctttgccaggtggagatattaagctt
ttgtgtgatactgttgtgcaaaatgtgagggaacttacgggttatgatcgggttatggtg
tataagtttcatgaagatgagcatggtgaagttgtagcggaatgcaaacgggctgatttg
gatccatatattggtttgcattatccggctacagatatacctcaagcttcaagattcttg
tttaggcaaaaccgtgttagaatgattgttgactgtcatacgaatcctgttcgtgtgatc
caagacgaggcattaatgcaaccattgagcttggtgggttcgactcttcgggcccctcat
ggttgtcatgctcagtacatggccaacatgggctctatagcttcattagccatggcagta
attattaatggaccagatgatgaaaatacaggacaaagagcttcaatgagactttggggt
ttagttgtttgtcatcatacatcggcccgttgtattccttttcctcttcgttacgcttgt
gaatttttgatgcaggcgtttgggcttcaattaaatatggaattacagttagctgctcaa
atgtcggaaaaacacattttaagaacacaaactttattatgtgatatgcttcttcgtgac
tcaccaacgggtatagtgactcaaagcccaagtatcatggatcttataaaatgtgatggg
gctgcactttacaatcaaggaaagtactacccgctaggtgtaaccccaactgaagcccaa
atcaaagatattatcgattggctaactgcagtgcaccttgattcaaccggtttaagcact
gatagtttagccgatgcaggttatccaggagccacagctctgggggatgcagtttgtggg
atggcagtggcttacattacatctaaagatatattattttggttcagatcaaatactgcc
aaagagataaaatggggtggtgctaaacatcatccggaagataaagatgatggtcaaaga
atgcatccgcgttcttcttttaatgcatttttggaagtggtgaaaagtaggagtttgcca
tgggagaatgctgaaatggatgcaatacattcgttacagcttattttgagagactcattt
aaagatgttgatgaaaataactcaaaagctgttgttaatgctcattatgaagatatggag
ttgcaaggtatggatgaacttagctcggttgcacgagaaatggttaggttaatagagact
gcaactgctcctatacttgcagttgatgttgaaggtcgaataaatggatggaatgcaaag
gttgcagaattaactggtttgtcagtggagaatgctatggggaaatcattggttcaggat
cttgtgtataaagaatcagaagaaacagttgctaaacttttggatcgtgcgttaagaggt
gaagaagataaaaatgtggagatcaagttgaagacattcaattcgtcaatggaagaaacc
gcggtttttgtagtagtcaatgcttgttccagcaaagactacaccgataacatagtagga
gtttgctttgttggccaagatgtcacccgtcaaaaagttgtcatggataaatttattcaa
attcaaggcgattacaaggccattgttcagaacccaagtgctctaataccacctatattt
gcttccgatgagaacacatgttgctcagagtggaacattgccatggagaaacttacgggc
tggactcgagcagaaatccttggtaaaaccttggttggggaaatttttggaagtgtttgt
cgtctaaaaggtcctgattctttgacaaaattcatgatcattctgcataatgcaatcgga
ggccaagatacggaaaagtaccccttttcattctttgacaaaaatgggaaatacgttcaa
gttcttttaacagctaataagaggatgaatgtggcaggagaggttattggggccttttgt
tttttgcaaattgcaagtccggaattgcaacaagcacttaaagtacaattgcaacaagaa
aagaagtgtcatgagagaatgaaagaattggcttatatctgtcatgagatcaaaaatccg
ttaagtggcattcgttttgcaaattctcttttggaagcatcagatttaaccgaagatcag
aagcagttgcttgaaacttctgcagcatgtgagaaacaaatgttcaagatcataaaagat
gttgataaggaaaacatccaagagggttctttagagatggagaaacatgaatttgtactt
gggaatgtaatcaatgctgtggtgagccaagtaatgttactgctgcagcatagaggtcta
caactgatccgagatattccagaggaagtcaaaacattgaccatttacggtgatcaagcg
aggatgcaacaagtgttgacagacttcttgttgaatatggcacgtcattcgccctcacca
gggggttgggtggaacttcaagttcgcccgaccttgaagcaaacttctgatggaaatgtt
gtacatgttgcatttaggatcatgtctcctggtgaaggtctatcgccggagttggttcaa
gacatgtttcatagcagtgaatggtcaagcgaagaaggtttaggactaagcatgtgtcga
aaaatactaactcttatgaatggtgaagttcaatatatcagagaatcagaaagatgttat
ttctttgtcgttcttgaagtaccaccacattaa
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