Erigeron canadensis (horseweed): 122586181
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Entry
122586181 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122586181
03036 Chromosome and associated proteins [BR:
ecad03036
]
122586181
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122586181
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
Helicases
122586181
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122586181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
FlpD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122586181
NCBI-ProteinID:
XP_043614222
LinkDB
All DBs
Position
1:complement(26518184..26525050)
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AA seq
614 aa
AA seq
DB search
MKSMGMHEYNDSVNDKNPNSVSNFKISEPLRNALEMKGIESLFPIQARTFELIYDGHDLI
GKAKTGQGKTLAFILPILESLTNGPEKASRRSGYGRAPTILVLLPTRELAKQVFSDFKYY
GDAVGLTSCCLYGGGGASISPQTAQLKKGVDIVVGAVGRVKDHIERGNLDFSSLKFRILD
EADEMLRQGFVEDVEYILGKVNDASKVQTVLFSATLPAWVNHIASQFLKANKKTVDLVGV
EVMKANENVRHIIMPCSSSARYQVLPDIIRHHNSGGRTIIFTETKDYCSELAGVLPGARP
LHGDIQQTQREATLAGFRLGKFLILVATNVAARGLDINDVQLIIQCEPPRDVDDYIHRSG
RTGRAGNSGIAITLYEPRRANISKLEREAGVKFEHVSAPQPSDIAKAAGVDAAEAILQIT
DSVIPVFKSAAEDLLNTSGLSPVELLAKALAKSIGYTQIKQRSLLTSMENYVTVLLEAGR
PIYTPSFAYGVLRRFLPEEKVESVRGLALTADQKCAVFDVAVDDLDTFLAGQQNAGGIRL
EVVKALPPLQEKEQSRGRYGDSHVGYGNRRGGSGSGNVGGFSRGGRVGLSDGRNDRFLRG
SSGGGRGRGAYRKW
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaatgggaatgcatgaatataatgatagtgttaatgataagaatccaaattcg
gtatcgaatttcaagatatcagaaccattaaggaacgcattggagatgaaggggattgaa
tctttgtttcctattcaagctcgtacgttcgaattaatatatgacggtcatgatttgatt
ggaaaggctaaaactggccagggtaaaacattagcattcattttgccgatactagagtcc
ctaacaaatggacctgagaaagcatcacggaggagtggttacggtcgagcaccaacaatt
cttgtgcttctacctacaagggaattagcaaagcaggtattttctgactttaaatactat
ggtgatgcggtgggattgacatcgtgttgtttgtatggtggaggtggagcgtcaatttct
cctcaaacagcacaactgaaaaaaggggtggatatagttgtgggggccgtcggtcgtgtt
aaggatcacatagagagaggaaatcttgatttcagttctctgaagttccgcattcttgat
gaagctgatgaaatgttgaggcagggatttgttgaagacgtggagtatattctaggcaag
gtcaatgatgcaagcaaagttcaaactgttttgtttagtgcaactttaccagcttgggta
aaccatattgcttcacagtttctgaaagcgaacaaaaagactgtagatcttgttggtgtg
gaggtaatgaaggccaatgaaaacgtgagacatataatcatgccttgctctagttcagca
agataccaagttcttcctgatataattcgccatcataacagtggaggacgaaccattatt
tttacagaaacaaaagattattgttctgaacttgctggagtgttgcccggagcacgacca
ttgcatggggatatacagcagactcaacgcgaggcaacacttgcagggtttcgattgggg
aagttcctgatactagttgccacaaatgtggctgcacgtggactggatataaacgatgtt
cagttgattatccagtgtgaaccaccacgtgatgttgatgactatattcatcgatcagga
aggacaggaagagcaggaaattctggtattgccattacactttatgagccaaggagagca
aatatttctaagttagagagagaagctggtgtaaaattcgaacacgtgtcagctcctcaa
ccatccgatatcgccaaagctgctggtgtggatgctgcagaagctatacttcaaatcacg
gatagtgtgatccccgtctttaagtcagctgctgaagatctcttgaacacttctggtctc
tcacctgtagaactgctcgctaaggcgcttgccaagagcattggttatacacagatcaag
caaagatcattactaacttccatggaaaattatgtgacagtacttctcgaggctggaaga
cccatttacacgccttcttttgcttatggtgtcttgaggaggttcttacctgaagagaag
gttgagtccgttagaggtcttgcattgactgctgatcaaaaatgtgctgtttttgatgtt
gctgttgatgatttggacacattccttgcagggcagcaaaatgccggtggtataaggtta
gaggtggtgaaagcattgccaccattgcaggaaaaagaacagtcaagggggcgatatgga
gacagccatgttggatatggtaacagaagaggcggttctggtagtggcaatgttggtggg
ttctcacgaggtggacgagttggtctatcagatggtcgtaatgacaggtttcttagaggt
tctagcggcggaggtagaggccgaggggcctatagaaaatggtaa
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