KEGG   Erigeron canadensis (horseweed): 122586301
Entry
122586301         CDS       T07610                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
ecad  Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ecad03036]
    122586301
   03400 DNA repair and recombination proteins [BR:ecad03400]
    122586301
Chromosome and associated proteins [BR:ecad03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    122586301
DNA repair and recombination proteins [BR:ecad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     122586301
SSDB
Motif
Pfam: MMS19_N MMS19_C HEAT_EZ HEAT_2
Other DBs
NCBI-GeneID: 122586301
NCBI-ProteinID: XP_043614238
LinkDB
Position
2:45658890..45665226
AA seq 1076 aa
MAAAATFIHLIETYVDSSSSKSPAQQDASLDAIAKLLITDIVTLESLVIEMEMYLTTTDN
IIRARGILLLAELLTRLSSKHIEKKTVHSLIGFFSDRLSDWRALRGALVGCLALMRRKGD
IGVISGSDATAVAQSFMQNLQVQSLGQHDRKLCFEILECLIDQYPDTILDVEDEFVYAVC
EAIDGEKDPQCLLITFHLVEMLTQLCTESSSSLASYAEDLFSILGSYFPIHFTHSKGEDD
VKREELSRALMLAFASTPLFLPFSIPVLLEKLSSSLPSAKIEAFKYLSYSVVKYGTRGIL
EHLEAIWSSLKEAVFSSVPSNLTVGPFEDNKIVDEALILLEKLIQQDDSSFLNLVLKDVD
MNMTLKSLSNYTSYDDITMTEKQRLTAVGRILYVITAASMGSCNAIFQGFFTELVQGLLA
TTQEKNHVSGRLNFGYLYICVELLAACKTLVKTTSIAYPENETWCSVLHGFCSSLTSTFV
KSMKKNTQDVYSQLGVRGLQILASFPGIFFAVSKSTFENILGEFVVMILEFNNTSRWRYI
LKALIEVGSYIEESDDSEKRQSFDVIVVEWMMGLLSSEDLTMPLSLKVEAVAEINMVSLK
YMLRFVHKLDNAISTSLHKYWLDGNSKSNECAMLLLECYSDKVLPWFQNIKDSDYVPLHF
ALNIWDEIHGCSVFCDSLMEQKLLDSTMNAMKLAVACCSEDDQSMILDKAFSILSSSTSF
HLNESAVFSCREDWIISLFDSVIIALRPRRQFNNDEEILKILMRSLSNGHVSSAHALGSV
FNKMPLEEAVDITFNSFITRLYNGDSLIASNINVNVIVGLAWIGKGLIMRGHEKVKDVIK
FFLNCLISNSGFPTSNGSTDSSEMTLMMRAAADSFSIIMSDSEACLNRRLHATTRPLYKQ
RLFNMVIPILQSSLVKSDSPTTCRSMVHRALAHVISNTPLSAVMGDAKKLVPLVVDGLTI
LSEDVQNQDIVYNLLLAFSGMLTDENGRDAIVENAYVIIRCLNRLAFYSHMMLVRETAIQ
CLTAMSELPYARIYPFRLEVLQVLSRALDDPKRSVRQEAVKCRQAWASISSRSLRI
NT seq 3231 nt   +upstreamnt  +downstreamnt
atggctgctgctgctaccttcatccaccttatcgaaacttatgtcgattcatcttcctct
aaatctccagctcagcaggatgcaagtttagatgccatagctaagcttcttattactgat
atcgttactctcgaatcactggttatagagatggagatgtatttaactactactgataac
attattcgtgctagaggcattcttcttctagccgagttgttgactcgtttatcgtcaaag
catatagagaagaagacagtacatagtttgattgggtttttctcagatagattgtctgat
tggcgagcgttgcgtggtgcacttgttggatgtttggctttaatgaggaggaaaggtgac
atcggtgtaataagtggcagtgatgcaactgcagttgctcagtcatttatgcaaaatcta
caagttcaatctttaggacaacatgacaggaagctttgcttcgagattctagaatgcctt
atagatcaatatcctgacacaatattggatgtggaggatgagtttgtttatgcagtctgt
gaagctatagatggtgaaaaggacccacagtgcttattaatcacctttcatcttgttgaa
atgctcacacagctgtgtacagaatcgtcaagttcactagcaagctatgctgaggatctt
tttagcattctgggatcttattttcccatccactttacacattcaaaaggtgaggatgat
gtgaagagggaggagctttcaagagcattaatgctggcttttgcatctacaccactcttt
ttaccgttttccatcccagtgcttctagagaaactctcttcatctcttccatcagcaaaa
attgaagcttttaagtatcttagttattctgtagtcaagtatggtacacgtggaatacta
gaacatcttgaagctatatggtcatcgcttaaagaagcagtttttagttctgtaccatct
aacttgacggtgggtccattcgaggataacaaaattgtagatgaagccctcattcttcta
gagaagcttattcagcaagatgacagctcgtttctaaatcttgttctgaaggatgtggat
atgaacatgactctgaaatccctttcgaattatacgagttatgatgatattacaatgaca
gaaaagcaaagattaactgcagttggtcggattctatatgtcataactgcagcttccatg
ggttcttgtaatgcaatatttcaaggttttttcacggagttagtacagggtttgctagca
acgacccaagagaaaaatcatgtttctggaagactcaattttggttacctttatatatgt
gttgaattacttgctgcctgcaaaactttggtcaaaacgacctcgatagcttatcctgaa
aatgagacatggtgcagcgtgcttcatggtttctgtagttcattaacttctacatttgta
aaaagcatgaaaaaaaacactcaggatgtctacagtcaattgggggttaggggtttacag
attttggcttcatttcctggaattttctttgctgtatcaaaatcaacatttgagaatatt
ttgggagaatttgtagttatgatccttgaattcaacaatacatctcgttggagatatata
ttgaaggcactaattgaagttggctcatatattgaagaatctgatgattctgagaaaagg
caaagctttgacgttattgttgtagagtggatgatgggtttgttgtcctctgaagacttg
acaatgcctttgtcactaaaagttgaagcagtagctgagatcaacatggtcagtttgaaa
tacatgctgagattcgtccacaaactggacaatgctatctctaccagtttgcacaaatat
tggcttgatggaaactcaaagtcaaatgaatgtgcgatgctcctgttggaatgctattct
gacaaggtgcttccatggtttcagaatatcaaagattctgactatgtgcctctgcatttt
gcattgaatatttgggatgaaattcacggttgctcagttttctgtgacagcctcatggaa
cagaaacttctagattcaacaatgaatgcaatgaagcttgctgtggcatgttgttcagag
gatgatcaaagcatgattcttgataaagccttcagcatactttcttcaagcacaagtttc
cacctgaatgaatctgctgtgttttcttgtagagaagattggataatctcattatttgat
tcagtaataatagcccttcgtcctcgacgacagtttaataacgatgaagaaattttgaag
atactcatgagatccctctccaatggtcatgtttcatcagctcatgcattagggtctgtg
ttcaacaagatgcccttggaagaagcagtggatatcacatttaacagcttcataactagg
ttgtacaacggtgacagtttaatagcaagcaacataaatgtaaatgtcattgttggatta
gcatggataggaaaaggattaattatgaggggacatgaaaaggtaaaagatgtgatcaag
ttttttctgaattgtttgatttcaaatagtggttttccaacctcgaatggaagcacagat
tcgtctgaaatgacgctcatgatgagagctgctgcagactcatttagtataataatgagt
gattccgaggcttgtttaaatagaagattgcatgctaccactagaccactatataagcag
aggcttttcaatatggtgataccgatcttgcaatcatcactagtcaaatcagattcgcca
acaacttgcagatccatggtgcaccgggcccttgcacatgtcatatccaatactccactg
agtgctgttatgggtgatgccaagaagctcgtccctttggtagttgatggtttgacgatc
ttaagtgaagatgttcaaaatcaagacattgtatataacctcctccttgctttctcagga
atgttgactgatgaaaatggtcgggatgctatagtagaaaatgcatatgtcatcataagg
tgcctcaataggcttgctttctactcacacatgatgctggtacgtgagacggcaattcag
tgtctaactgccatgtctgagctgccctatgctaggatatatcctttcaggctagaggtg
ctacaagtgttatcaagggctcttgatgacccgaagagaagtgtcaggcaagaggctgta
aaatgtcggcaggcatgggcctcaatctcatctagaagtcttcgtatataa

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