Erigeron canadensis (horseweed): 122586307
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Entry
122586307 CDS
T07610
Name
(RefSeq) rhamnogalacturonate lyase B-like isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
122586307
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
122586307
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
122586307
NCBI-ProteinID:
XP_043614243
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Position
2:17526968..17537919
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AA seq
669 aa
AA seq
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MGLWTKFFTTVIKTIFGTCGKGDHQQGFRPMSYNGVRLWIQDHHVLLDNGIVQVTLSKPG
GLVTGVRYNGLDNVLEVLNQEGNRGYWDVVWSALDDSGRKGVFEVISATSYKVIVETEEQ
VELSFSRPWDPCLRGKLAPINIDKRFVLLRGSSGFYTYAIYEHLGSAEWQGFSLGETRIA
FKLRKDRFHYMAVADDRRRYMPLPDDRLAGRAQPLAFQEAVSLVNPVVPEFRGEVDDKYQ
YTCENKDLMVHGWISNDPPVGFWQIIPSNEFRTGGPLKQNLCSHVGPTCLAVFVGAHYAG
DDLVPKFAQGEPWKKVFGPVFIYLNSTMCGEDPITLWDDAKRQMMVEVSSWPYSFPASED
FPKSHDRGNCRGRLLVRDRYLYNDDILANGAYIGLAPRGDVGSWQRECKDYQFWTEANCS
GEFSIKNVRCGEYNLYAWVPGFLGDYQFHAPLTIIPGCDINLGDLIYEPPRDGPTLWEIG
IPDRSAAEFHVPEPNPNYVNQLFVNNPKSNFRQYGLWERYGELYPYGDLVYTVGESDYRK
DWFYAQVPRRKEDNSYEGTTWQIKFRLENVRYAAIYKLRIALAGAALAEVQIRVNDPNKP
RPLFTTGLIGRDNAIARHGIHGLYWLYNIDISGTLLIEGENTIYLKQPRNQSPFQGIMYD
YIRLEGPPN
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgggactctggacaaaatttttcacaacggtcatcaaaacaatcttcggcacatgtgga
aaaggggatcatcaacaaggatttaggccaatgtcatataatggcgtgcgattgtggatt
caagatcaccatgtactgcttgataatggtattgtgcaagtgacattatcgaaaccaggt
ggacttgtcacgggggtcagatacaatggccttgacaacgttctggaggttcttaatcag
gaaggtaatagagggtactgggacgttgtgtggagtgctctagatgactcaggaagaaaa
ggagtatttgaagtgatcagtgcaacaagctataaggttatagtggaaacagaggaacaa
gtagagctgtccttttcaagaccttgggatccttgtcttcggggaaaacttgctcctata
aatatagataagagatttgttctgcttcgtggctcctctggcttctacacttatgctatt
tatgaacacttgggttctgcagaatggcaaggtttcagcctcggtgaaacacggatcgca
ttcaaactcagaaaagataggtttcactacatggcagtggctgatgatagaagaagatac
atgcccctgccagatgatcggttagcaggaagagcccaacctcttgcttttcaggaagct
gtatcactagtcaacccagttgtgcctgaatttagaggggaggtggatgacaagtatcag
tatacttgcgagaataaagatctcatggtacatgggtggatatcaaatgaccctccagtt
ggattttggcaaattataccgagcaacgagttccgtactggcgggcctcttaagcaaaac
ctttgttcccatgttggtcccacttgcttagctgtttttgttggtgctcattatgctggg
gatgatctagtcccaaaatttgcacagggtgaaccatggaaaaaggtctttgggccggta
tttatttatctgaattcaactatgtgcggggaagatcctataacactttgggatgatgca
aaaagacagatgatggttgaggtcagtagttggccttatagctttccagcgtctgaggat
tttccaaaatcacatgaccgaggaaattgcagaggcagattacttgttcgggacagatac
ctctacaatgatgacatccttgcaaatggtgcatatattgggttggcgccacgaggagat
gttggatcatggcaaagagaatgcaaggactatcaattctggacagaagcaaattgctct
ggagagttctccattaaaaatgtaagatgcggagaatataatttgtatgcttgggtccct
ggattcctgggggactaccaatttcatgctccactcaccatcattccaggctgtgatatt
aatttgggtgatcttatatatgagcctccaagagatggtccgactttgtgggaaataggg
atcccagaccgatctgctgcagagtttcatgtcccagagcctaaccccaattacgtgaac
caactttttgtcaataatcccaagagcaactttaggcagtatggcctatgggaaagatat
ggagagttgtatccttatggcgacttggtgtacacggttggagagagtgattatcgcaaa
gattggttctatgctcaagttccaaggagaaaagaagacaattcgtatgaaggaactaca
tggcagataaagttccgacttgaaaatgtccggtatgctgctatttataagttacgaata
gcacttgctggtgcagctcttgcagaagtacagattcgggtaaatgatccaaacaaacca
cgtccactatttacaacaggactgataggacgggacaatgcaatcgcgagacatgggatt
catgggctatattggctatacaacatagacatttcaggcactttactcattgaaggagaa
aacactatatatcttaaacaacccaggaaccaaagcccctttcaaggtattatgtatgat
tacatacgcttggaaggaccccctaattag
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