KEGG   Erigeron canadensis (horseweed): 122587019
Entry
122587019         CDS       T07610                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122587019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecad03021]
    122587019
Enzymes [BR:ecad01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     122587019
Transcription machinery [BR:ecad03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     122587019
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 122587019
NCBI-ProteinID: XP_043615014
LinkDB
Position
2:complement(24782266..24790686)
AA seq 1201 aa
MEEAGPSSKEKPTNGSVQLDLDEEFDDDDMMDAPSLKDLDAVTLKTFTKKALTAFFRHYG
LISHQINSFNDFIKVGIQDVFDSIGEIIVEPGYDPSKKGDNEWRFASIRFGNVTLERPRF
WTGEKFSADSGKDYLEFLPRHARLQNMTYSSRMKVHITKQVYTQELVRSDKFKTGKEKFL
DKKILDTEEREVHIGRIPVMVNSDSCWMSGAEKDDCDYDQGGYFIIKGAEKTFIAQEQLT
LNRVSLASSPNWRVQYTDIWKRKRVYVKLVDTPKIGDIGGGGAHVITGYILSLMDIPIWI
LFFALGVSSDKEVVDMIGADIEDGTIVNILIASIHNADELCAEFRRGKNSLIHIEKLLKN
SRFPPTESVTECIDKYLFPNITGFGRKARYLGYMVKCLLEGFTGRRKVDNRDDFRNRRLE
LAGELLERELRNHLRHAVKKMTKTMQRDLYPDRNVHPMEHYLDAAIITNGLSRAFSTGSW
SHPFKSMEKTNGVVAMLRRANPLQMIADMRKTRHHVNYAGKVGDARYPHPSHWGKLCYLS
TPDGEHCGLIKNLAGTALVSTTVREQLSDILIACGMEQLAQDTKMSLTGLDKIFVNGDWV
GTCKNSASFVAEFRHKRRTKEVPQMVEIKRDTKNKEVRIFCDAGRILRPLLVVKNLHKIK
HLKGGRYSFQDLLDNGVVELIGTEEEEDCCTAWDMKYLFLESKDHNPEKYTHCELDMSCM
LGLSCGIIPFANHDHAKRVLMQSQKHSQQAMGYSCTNPDIRVDTLSHQLFYPQRPLFKTI
LSDCLEKAGQLHGQSQKGMIPRPEFYNGQCAIVAVNVHLGYNQEDSLVMNRASLDRGMFR
SEHIRSYKAEVNNKEALGLKIKNDDAVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV
IGKSTESGADHSVKLKHTERGMVQKVVLSANDEGQNFAVVSLRQVRTPCLGDKFSSMHGQ
KGVLGYLESQENCPFTVQGIVPDIVINPHAFPSRQTPGQMLESALSKGIALGGSQRYATP
FSSLSVDAITDQLHRAGFSRWGNERLYDGRTGEMIKSLVFMGPTFYQRLTHMAEDKVKFR
NTGPVHPLTRQPVVDRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSEMHVCRRC
KRMANVIQRSVPGGQKIRGPFCRVCDSVEEVIKVSVPYGAKLLGQELFSMGISLKFDTEL
C
NT seq 3606 nt   +upstreamnt  +downstreamnt
atggaagaagcaggaccgagctccaaggagaagcctacaaatggttctgtacaactcgac
ttagatgaggaatttgatgacgatgatatgatggatgcaccatcgttgaaggatctcgat
gcagtcactttgaagacctttactaaaaaggcattaacggctttttttagacactatggt
cttataagtcaccagatcaactcctttaacgacttcatcaaagtcggtattcaggatgtt
tttgactccattggtgagatcattgttgaaccggggtatgatccttcaaaaaagggtgat
aatgagtggcgatttgcttcgattaggtttgggaatgtgactcttgagcgccctaggttt
tggacaggagagaaattttctgctgatagtggtaaagattaccttgagttcttgcccaga
catgcacgtcttcagaacatgacctactcgtctcgcatgaaagttcatattactaagcag
gtgtatactcaagagctggttcgaagcgacaagtttaaaactgggaaagagaagtttctt
gataagaaaatcttagatactgaggagagggaagtgcatattgggagaattcctgtgatg
gttaattctgactcgtgttggatgagtggagccgagaaagatgactgtgattatgatcaa
ggaggctatttcattattaagggagctgagaagaccttcattgctcaagagcagcttaca
ttgaatagagtttctttggcgagcagtccaaattggcgtgtgcagtacacggatatttgg
aagaggaagagggtttatgtaaagcttgttgatactcctaaaattggagatataggagga
ggaggagcacacgtgataactggttatattctgagtttgatggatataccaatatggatt
ctgtttttcgctcttggggtatcgtcagataaagaagtggtcgacatgattggtgcagac
atcgaggatggaactattgtgaatattttgattgcgtcaattcacaatgcagatgagtta
tgcgcagagttccgtagagggaaaaattcactaattcatatcgagaagcttctgaaaaac
agcagatttccacccaccgagtctgttacagagtgtattgataagtatctgtttccaaat
attactggatttggtagaaaagcgcgatatcttggttatatggtgaagtgtctcttggaa
ggttttacgggccgcagaaaagtcgataatagagatgatttcaggaacaggaggttggag
ttggctggtgagttgcttgaaagagagctaagaaatcatctcagacatgctgtgaagaaa
atgacgaagaccatgcaacgggatctatatcctgatcgaaacgttcaccctatggagcac
tatctagatgctgccattattacaaatgggctttctcgggccttttcaacaggttcttgg
tcacatcccttcaaatccatggagaagacaaatggtgttgtggctatgcttaggagggca
aatcctttgcaaatgattgctgatatgaggaaaacacgccatcatgttaattatgccggg
aaggttggagatgcaagatacccgcacccttctcactggggaaagctgtgttatctttct
acccctgatggagaacattgtgggttgataaaaaatttggctggcacagctctcgtgtca
actacagtccgggaacaactatctgacatattgatagcctgtgggatggagcaattggca
caagataccaaaatgtcacttactggcttggataaaatctttgttaatggtgattgggtg
ggaacatgcaaaaattctgcctcatttgtggctgagtttaggcacaagcgacgcacaaag
gaagtgccccagatggttgaaattaaaagagatactaagaataaagaagtgcgcattttt
tgtgatgctggaaggattttgcgcccgcttttagttgttaaaaacttgcacaaaatcaaa
catctaaaagggggacgatactcgtttcaagatcttttagataatggagttgtagaacta
atcggaacggaagaggaagaagattgctgcacagcatgggacatgaaatatctttttcta
gaaagtaaagatcataaccctgaaaaatacacacattgtgaacttgacatgtcatgcatg
ttaggtttaagctgtggcattattccctttgctaatcatgatcatgccaaaagggtcctc
atgcagtctcagaaacacagtcagcaagcaatggggtactcgtgcacaaaccctgacatc
agagtcgatactctttctcaccagttattttacccacagaggcctcttttcaagaccata
ctgtctgattgtcttgaaaaagctggtcaacttcatggtcaaagtcaaaagggtatgatc
cctagacctgagttctataatggacagtgtgctattgtggctgttaatgtacatcttggt
tacaaccaagaggactcattggttatgaatcgtgcttcacttgaccgtggcatgttccgc
tcagaacatattcgaagttataaggcagaagttaataataaggaagctttggggctgaag
atcaagaatgatgatgctgtgaattttgggaagatacaaagtaagattggaagggttgat
agtttggatgatgatggttttccatttattggtgccaatttgcagagtggtgatatagtg
attgggaaatctacagaatcgggggctgatcatagtgtgaaattgaaacacactgaaaga
gggatggttcaaaaggtagtattatcggcaaatgatgaagggcagaactttgccgttgta
tctctaagacaggtacgtacaccatgccttggtgacaagttttcaagcatgcatgggcaa
aagggggttttgggttatctggagagtcaagaaaactgcccttttactgtacaaggaata
gttccagatattgttataaacccacatgcctttccatcaagacaaactcccgggcagatg
ctggaatctgctttgagcaagggaatcgcgttaggaggttcacaaagatatgcaacccct
ttctcttctttatctgttgatgctataacagaccagcttcacagggccggattttcaaga
tggggaaatgagagattatacgatggccggactggtgaaatgatcaaatccctggttttc
atgggaccgacattctaccagaggctgacccacatggctgaagacaaggtcaaatttcga
aacacgggtcctgtacatcctctcacccgacaaccagtggtagacaggaaacgatttggt
gggatcaagttcggggaaatggaacgtgactgtctcatagctcatggagcctctgctaat
ctacacgagcgtctattcactctcagtgactcctcagagatgcatgtctgcagaaggtgc
aagaggatggcgaatgtgatccagagatctgtccctgggggccaaaagatccgtgggccc
ttttgccgggtatgtgactcggtggaagaggtcattaaggtaagtgtgccttatggtgct
aagctacttggtcaggagctgttcagtatgggcatatctctgaagtttgacactgagtta
tgttag

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