Erigeron canadensis (horseweed): 122587214
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Entry
122587214 CDS
T07610
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04120
Ubiquitin mediated proteolysis
ecad04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122587214
04120 Ubiquitin mediated proteolysis
122587214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122587214
Enzymes [BR:
ecad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122587214
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
U-box type E3
122587214
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
122587214
NCBI-ProteinID:
XP_043615254
LinkDB
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Position
2:4106647..4112940
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AA seq
1005 aa
AA seq
DB search
MASTTTPKRSPEEIEDIILKKIFLVTLTDSMTNDPRIVYLEMTAAEIMSEGHDLKLSHHL
IERILVDRLSGNFVSAEPPFVYLIGIYKRAYEESKKISNMKDKLVKTHMEFVVNQAKKLS
VSYCRIHLSNPDMFPDWDKNKTNVSPLLPLVFNEVSSSVDVFGGGGSGSGNGALSCPGFL
EEFFKDTDYETMEPILKQLFEDLRGIVLKCSALGNFQQPLRALMYLISFPVGAKALVNHQ
WWIPKGAYLNGRVIEMTSILGPFFHVSALPDQTIFKGQPDVGQQCFSDSSTRRPADLLSS
FTTIKTVMNNLYDGLAEILRSLLKNTSTRENVLQYIAEVINKNASRSHIQVDPISSASSG
MFVNLSAVMLRLCEPFLDTHSTKKDKIDPKYVFYGSRLDFKELTALHASSEEVTDWLKLN
SPSNAHGSTNYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDSLATLKTMQEQA
PSPRLAQDIARVEKEIESSTQEKLCYEAQILRDGGLLQQALSFYQLMVVWLVSRIGGFRM
PLPQPCPMEFACMPEHFVEDVMELLIFASRIPRALDGVKLDDFMNFIIMFMASPEYIRNP
YLRAKMVEVLNCWMPRGNDTSSATSSLFEGHQLSVQYLVRNLLKLYVDIEFTGSHTQFYD
KFNIRHNIAELLEYLWRVPVHQNAWKQIAKEEEKGVYLNFLNFLINDSIFLLDESLNKIL
ELKELEAEMSNTVEWEQRPAQERQERTRLHHSQENIIRIDMKLAMEDVSMLAFSTEQITA
PFLLPEMVERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVNIYVHLAKGD
HENIFPSAITKDGRSYNDQLFTEASSVLRRIGEDPRVIQAFDNLGQKAKAAASEAMDAEA
VLGDIPDEFLDPIQYTLMKDPVILPSSRMVVDRPVIQRHLLSDATDPFNRSHLTPEMLIP
DIELKQKIEEFIRSQQNKQEGDEMSMQSSSKSSIQSPDGTRPLID
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaacaacacccaaaagatccccagaagaaatcgaagacataatccttaaa
aaaatattcctcgtaaccctaactgattcaatgacaaacgacccacgaatcgtttactta
gagatgacagctgcagaaatcatgagtgaaggtcatgacttgaaactttctcatcattta
atcgaacgaattctcgtcgaccgattatcgggtaatttcgtatctgcagaaccccctttt
gtttacttaattggtatatataaacgtgcttatgaagaaagtaagaaaatttctaatatg
aaagataaattagttaagacccatatggaatttgtcgttaatcaggcgaaaaagttgtcg
gtttcgtattgtaggatacatttaagtaaccctgatatgtttcctgattgggataagaat
aaaaccaatgtttcccctttattgcccttagtgtttaacgaggtttcgagttcggttgat
gtgtttgggggtggtgggagtgggagtgggaatggggcgttgagttgtccggggtttttg
gaggagttttttaaggatacggattatgagactatggaaccgatattgaaacagttgttt
gaggatttgagagggattgtgttgaagtgttcggcacttgggaattttcagcagccgttg
agggcgttgatgtatttgattagttttcctgttggtgctaaagcgttggtgaatcatcaa
tggtggatacctaaaggtgcgtatttgaatggtcgggttattgagatgacgagtattttg
ggtccgttttttcatgttagtgctcttcctgatcagactattttcaagggtcagcctgat
gttggtcagcagtgtttttcggattcatcgacacgacgtcctgcagaccttttgtcatcg
tttacgactattaagactgtcatgaacaacttatatgatggcttggcagaaattcttagg
tctcttcttaagaacacgagcacacgagagaatgtgcttcagtatattgccgaagtgatc
aacaaaaatgcatcaaggtcacacatccaggttgatccaatatcttctgcaagttcgggc
atgtttgtcaatctcagtgctgttatgcttcgcttgtgcgagccgttcttagacacacat
tcaacaaagaaagacaaaattgaccctaaatatgtattttatggttctcgtttggatttc
aaagaactcactgcacttcatgcatcttcagaggaagttactgattggttaaaattaaat
agcccaagcaatgcacacggatctacgaactattcatttatttgtgaatgtttttttatg
actgcgcgggtcctgaatttgggattgttgaaagctttttcagacttcaagcatcttgtg
caggacatatcaagatctgaggatagcctagcaactttaaaaaccatgcaggagcaagca
ccttcacctcgactggcacaggatattgctcgagttgagaaagaaatcgaatcttctaca
caggagaaactatgttacgaggcacagatattgagggatggaggacttcttcaacaggcg
ctatctttctatcagttaatggtagtttggttggtaagtcgaataggcggattcagaatg
ccgttaccacaaccttgcccaatggaatttgcatgtatgcctgagcactttgtggaagac
gttatggaattgctaatttttgcttctaggattccacgagctttggatggtgtcaagctg
gatgattttatgaacttcattatcatgttcatggcgagtccagaatatattagaaatcct
tatttaagagcaaaaatggttgaagtcctgaactgctggatgcctcgtgggaatgacaca
tcgtctgccacaagttcactatttgaggggcaccaactatctgtccaatatcttgtgaga
aatcttttgaaactttacgttgatatcgaattcacaggctcccacacacagttctatgac
aaatttaacatccgtcataacatcgctgagctactagagtatctgtggcgggttcctgtt
catcagaatgcttggaaacagattgccaaagaagaggagaagggtgtttaccttaacttc
ttgaacttcctaattaatgacagtatctttcttcttgatgaaagcctgaacaagattctt
gaactcaaagagctggaagctgagatgtctaacacagttgaatgggaacaaagaccggca
caagagaggcaggagagaactagacttcaccactcccaagaaaatattattaggattgat
atgaagttggccatggaagatgtgagcatgcttgctttctccacagagcaaattaccgct
cctttcctgctaccagaaatggttgaaagagttgccagcatgttaaattattttctacta
caacttgtaggtccccagaggaaatcgttaaccttgaaggatcctgaaaaatatgagttt
cggccaaaacagttgctaaagcagattgtcaacatatatgttcatctggcaaaaggtgat
catgagaatattttcccatctgccattacaaaggatggacggtcctacaatgaccagtta
ttcacagaagcttcaagtgttcttagaagaattggtgaagatccaagagttatacaggca
tttgataatcttggtcaaaaggctaaagctgcagcatcagaagccatggatgctgaagct
gttcttggggatatcccagatgaatttctagatccaatccagtacactctgatgaaagat
ccggtcattttaccatcctcaagaatggtagtagaccgaccagtgattcagaggcatctt
cttagtgatgcaacagatcccttcaatcgttcacatcttaccccagaaatgctgattcca
gacatagaactgaagcaaaaaattgaggaattcattaggtcacaacaaaataagcaagag
ggtgacgagatgagcatgcaaagcagctccaaatcttcaattcaatcacctgatggtacg
aggcctttaattgattag
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