Erigeron canadensis (horseweed): 122587309
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Entry
122587309 CDS
T07610
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122587309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecad04131
]
122587309
Membrane trafficking [BR:
ecad04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
122587309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
122587309
NCBI-ProteinID:
XP_043615373
LinkDB
All DBs
Position
2:complement(3940405..3951487)
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AA seq
791 aa
AA seq
DB search
MMIADAMEDEEKWLAEAIAGIQHNAFYMHRALDDNNLREALKYSAQLLSELRTSRLSPHK
YYDLYMRAFDELRKLEMFFKEEERHGCSVVDLYELVQHAGNILPRLYLLCTVGSVYIKSK
EAPAKDVLKDLVEMCRAVQHPLRGLFLRSYLAQISRDKLPDIGSEYEGDGDTVMDAVEFV
LQNFSEMNKLWVRMEHQGPARVREKMEKERNELRDLVGKNLHVLSQIEGIDLDLYKETVL
PRILEQVVNCKDELAQYYLMDCLIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSQLM
ERLSSYAASSPEVLPEFLQVEAFAKLSSAIGKVIETQGDMPIVGAITLYVSLLTFTLRVH
PDRLDYVDQVLGSCVKILSNKPKLEDSRATKQVVALLSAPLEKYSDIVTSLTLSNYPRVM
DHLDNGTNKVMAMVIIQSIMTNQACVSSADKVEVLFELIKGLIKDLEGDSEDEFDEEDFN
EEQNSISRVIHVLYNDDPEEMLKIILTVRKHIMTGGPKRLPFTIPPLVFSALKLVRQLQN
QDGDVAGEEDPATPKKIFQLLNQIIEALSYVPAPELALRLYLQCAEAANDCDLEPVAYEF
FTQAFVIYEEEIADSKAQVTAIHLIIGTLQRTNVFGVENRDTLTHKATGYSAKLLKKPDQ
CRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVTLFVEIL
NKYLYYFEKGNPQITSATIQGLIELIKTEMQSDTATPNQTSDAFFACTLRYIQFQKQKGG
AMGEKFDAIKV
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgatgatcgcagacgcaatggaagatgaagaaaaatggctggcagaagccatcgccgga
attcaacacaacgctttttacatgcatcgtgctttagatgataataacctgagagaagct
ctaaaatactctgcacagttgttatctgagctccgcacttcacgtttatcgcctcataaa
tactacgatctttatatgagagcctttgatgaattgagaaagttggagatgttctttaag
gaagaagagaggcatggctgttcagtagtcgatttgtatgaactcgtccaacatgctgga
aatattttacctagactgtatctcttatgtaccgtagggtctgtgtacataaaatcaaag
gaggctcctgctaaagatgttcttaaagaccttgttgagatgtgtcgtgcagttcagcat
ccccttcgtgggctcttccttaggagttaccttgcacaaattagtagagataagcttcct
gatattgggtctgaatatgaaggagatggtgatactgtcatggatgctgtagagtttgtg
ttgcaaaatttttcagagatgaataaactctgggttcggatggagcatcagggacctgcc
agggtgcgggagaaaatggagaaggagaggaacgagctgcgtgatctagtcggtaaaaat
cttcatgttcttagtcagatagagggtattgaccttgatttgtacaaagagactgttcta
ccgagaatcttggagcaggttgtcaactgtaaggatgagcttgcacagtattatctgatg
gactgcctgattcaagtgtttccagatgagtatcacttacagacacttgaaacccttcta
ggagcttgtccccagctccagcctacggttgatatcaagacagtactatcccaactaatg
gagagactatcaagttatgctgcttcaagtccagaagtcctaccagagtttctccaagta
gaagcttttgcaaaattgagcagtgctattgggaaggttattgaaactcagggtgacatg
ccaattgttggtgccattactttgtatgtttcccttctcacattcactcttcgtgttcat
cctgatcggcttgattatgtggatcaagtgctggggtcatgcgtaaagatactctcaaac
aaaccaaagcttgaagatagtagagctacaaaacaagttgttgcacttttgagtgctcca
ctggaaaaatatagtgatattgtcacttccctgacgctgtctaattatcctcgagttatg
gatcaccttgataatggaactaacaaagtaatggctatggttattatccaaagcataatg
acgaaccaagcttgtgtatcttctgctgacaaggttgaggttctttttgaactaattaaa
gggcttataaaggacttggagggagattctgaggatgagttcgatgaggaggattttaat
gaagaacaaaattctatttctcgtgttatacatgtgctatataacgacgacccagaggag
atgttgaagattatcttaacagtgcgaaagcatatcatgactggaggcccaaaacgtctt
cctttcacaatccctccactagtcttttctgctttgaagctggttcgtcaattgcaaaat
caggatggagatgtagctggggaagaggatccagcaactcctaagaaaatttttcagctt
ctaaatcagataattgaggcactttcgtatgttccagcaccagaattggcattgaggttg
tacttgcaatgtgcagaggctgccaatgactgtgatctggaaccagttgcttatgagttc
ttcactcaagcatttgttatatatgaagaagaaatagcggactcgaaagcccaggtaact
gcaattcacctaattattgggacccttcaaaggacaaatgtatttggtgtggagaacagg
gataccttgacgcataaggccacggggtattcagctaaacttcttaagaagccagatcaa
tgcagagccgtttacgcatgttctcatctgttttgggtggatgatcaggatggaatcaag
gatggagaaagggtcctcctttgccttaagcgtgcattaaggatcgcaaatgctgcacag
cagatggcaaatgttgctcgaggtagcagtgggcccgtaactctctttgtcgaaatactc
aacaagtacctctattacttcgagaaaggaaatccacaaataacaagtgctacaatccaa
gggcttatagagctgattaaaaccgagatgcaaagtgacacggccacacccaatcaaact
tcagatgctttctttgcttgtaccttaaggtacattcagttccagaaacagaaaggtgga
gcaatgggcgagaagtttgatgcgataaaggtgtaa
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