Erigeron canadensis (horseweed): 122587316
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Entry
122587316 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122587316
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122587316
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
Helicases
122587316
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GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
122587316
NCBI-ProteinID:
XP_043615383
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All DBs
Position
2:25586722..25592873
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AA seq
583 aa
AA seq
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MASTEPNRALTDTRFSDLSPPLSDEVLTVLSSSGFEFCTPVQAATIPLLCSYKDVAVDAA
TGSGKTLAFVVPLVEILRRTKTAKPHEVLGIIISPTRELSSQIYHVAQPFISSLPGVKPV
LLVGGTEVKVDMKKIEDEGGNLLIGTPGRLHDIMDRMDILDFRNLEILILDEADRLLDMG
FQKQINSIISRLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRTETKSLGCSSSEQT
TSKTPSGLHIEFIKCEADKKSSQLVDFFIKNKSKKMIVYFMTCACVDYWGVVLPRLSALK
GLSLISLHGKMKQSAREKALASFTSLPGGILLCTDVAARGLDIPGVDCIVQYDPPQDPNV
FIHRVGRTARLGRQGSAIVFLLPKEEAYVEFLRIKRIPLEESQCTEEALDVVPLIRAAAK
KDRDVMEKGLRAFVSYIRAYKEHHCNFILRWKDLEIGKLGMGYGLLQLPSMSEVKQNSLS
TEGFIAAEDLNLEEIKFKDKNREKQRKKNLQVKKDTPQEPKTLKAKAKKVPTVLKKRTAK
QRRAVQSAEDDEELTRDYRLLKKLKKGAINENEFAKLTGTEDL
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaccgagcccaacagagccttgaccgacacccgtttctcagacctcagcccc
ccactttccgatgaagtcttgaccgtcttatcttcttctgggttcgaattctgcaccccg
gttcaagccgccactatccccttgctatgtagctacaaagatgttgctgttgatgccgcc
actgggtccggcaaaacattagcttttgttgtccctctcgttgaaatcctacgtcgtact
aagactgccaaacctcatgaggtattagggatcatcatatctccaacaagagagttatca
tcacaaatctatcatgttgcacaacctttcatatcatcattgccaggtgttaaaccagtg
ctccttgtcggaggaacagaagttaaagtagacatgaagaaaatagaggacgagggaggt
aatttgctaataggcacgcccggtagactacatgacataatggatcgtatggatatcttg
gattttcgtaaccttgagattttgatactggatgaggctgatagactgctcgatatgggg
ttccagaagcaaattaattctataatatctcgtttaccaaagctacgtagaactggtctt
ttctcagccactcaaaccgaagctgtggaagaattagcaaaagcaggattaaggaaccct
gtaagagttgaagttcgtactgaaactaaatcattgggctgttcttcatcagaacaaaca
acctcaaaaacaccttcaggcctccatattgagtttatcaaatgtgaagcagacaagaaa
tcatcacagcttgtcgattttttcatcaagaacaaatctaaaaagatgattgtctatttc
atgacttgtgcttgtgtggattattggggagttgtacttccacgtctttctgcgcttaag
gggttgtctttaatatctcttcatgggaagatgaagcagtcagcaagggagaaagcgtta
gcgtcctttacatctcttccgggtggcattcttctatgcactgatgtggcagcacgtggg
cttgacattccaggtgttgattgcatagtgcagtatgatcctcctcaagatcctaatgtt
ttcattcatagagttggccggactgctaggttgggacggcaaggaagtgccattgttttt
cttttacctaaggaggaagcatacgtagaatttttgcgcattaaaaggattcctctggaa
gagagtcaatgcactgaagaggcacttgatgtggttccccttatacgtgcggctgcaaag
aaagatcgtgatgttatggagaaagggctaagagcattcgtttcttacattcgtgcttat
aaagagcatcattgcaacttcattcttaggtggaaagatctagagattggaaagttaggc
atgggatacgggttattgcagttaccttcgatgtcagaggtaaagcaaaactcactttct
accgaaggctttattgccgctgaagacttaaacctggaagagatcaagttcaaggataaa
aacagagagaaacagagaaagaaaaatttgcaagtgaagaaggatacaccacaagaaccg
aaaacccttaaagctaaagcaaagaaagtgcccactgtcttaaagaagagaacagccaag
cagagacgtgctgtgcagtcagccgaggatgacgaggaacttactagagattaccgcctt
ttgaaaaagctgaaaaaaggtgcgataaatgaaaacgaatttgccaagttaactggaact
gaagatctttga
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