KEGG   Erigeron canadensis (horseweed): 122587422
Entry
122587422         CDS       T07610                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    122587422
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122587422
   03041 Spliceosome [BR:ecad03041]
    122587422
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     122587422
Spliceosome [BR:ecad03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    122587422
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WDR55 EIF3I WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_EIPR1 WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 122587422
NCBI-ProteinID: XP_043615521
LinkDB
Position
2:complement(28530495..28536696)
AA seq 378 aa
MKMEKQRGGGDCREWDEDAYRDTILEERESHSLTIFRAVFSPSSSPSSNQNADFIVSASS
DGSIATYSLSSLISSLPLNFGNTGAQNLYVGEPKCLLKGHDGPVYDVKFYGDGEDSFLLS
CGDDGRIRGWKWMDVLEADQGGLLKPQLDLANPQHKGPWGALSPIPENNAIAVDTQGGSI
YAAAGNSCAYCWDVEKSKIKMTFKGHASYLHSVVARNSYNQIITGSEDGTARIWDCRSGK
CTTVIQPGKDSKSKDLFSYVSCIALDASEKWLACGSGRNLSVWNLSASEKISEISTRACI
QDICFDDNQILAVGAEPVLSRYDMNGVMLSQIQCVPQSTFSVSLHPSGVMCVAGYGGVID
VLSQFGSHLCSFRCQAYR
NT seq 1137 nt   +upstreamnt  +downstreamnt
atgaaaatggagaaacaaagaggaggaggagactgtagggagtgggatgaagacgcctac
agagacaccattttagaagaaagggaatctcattctctcactatctttcgtgctgttttc
tccccctcttcttcaccatcatccaaccaaaacgctgatttcattgtctctgcatctagc
gacggttccattgcaacttactctttatcatctctaatctcatctcttccattgaacttc
ggaaatactggagctcaaaatttatatgtaggtgaaccaaaatgcttacttaaaggacat
gatgggcctgtttatgatgttaagttttatggtgatggtgaagattccttcttgttgagt
tgtggcgatgatggtcgaattcgaggatggaagtggatggatgttttggaagcagaccaa
ggtggccttttgaagccacaacttgacttggcaaatcctcaacacaaaggaccgtggggt
gctctttcccctatccctgaaaataatgctatcgctgttgatactcaggggggttccatt
tatgcagccgctggtaattcatgtgcatattgttgggatgtggagaaatctaaaatcaaa
atgacctttaaagggcatgctagttatctacattctgttgttgctagaaattcatataac
cagattataactggttcagaggatggaacagccagaatttgggattgcagaagtggaaag
tgtactactgtgattcagccagggaaagattcaaaatctaaagacttgttttcgtatgtc
agttgcattgctcttgatgctagtgaaaagtggctggcttgtggcagtgggagaaatcta
tctgtctggaatctttctgcttctgaaaagatatcagagatatcaactcgtgcttgcatc
caagatatatgctttgacgataatcagatattagctgtcggagcagagccagtactgagt
cgatatgacatgaatggtgttatgctttctcagatacaatgtgtacctcaatccacattt
tccgtttccttgcatccatctggtgttatgtgtgttgctggttacggtggtgtgatagat
gttctctctcaatttggaagccacttgtgctcgtttcgctgtcaagcttatagatga

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