Erigeron canadensis (horseweed): 122587470
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Entry
122587470 CDS
T07610
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122587470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122587470
03110 Chaperones and folding catalysts [BR:
ecad03110
]
122587470
03029 Mitochondrial biogenesis [BR:
ecad03029
]
122587470
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecad04147
]
122587470
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
122587470
Messenger RNA biogenesis [BR:
ecad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
122587470
Chaperones and folding catalysts [BR:
ecad03110
]
Heat shock proteins
HSP60 / Chaperonin
122587470
Mitochondrial biogenesis [BR:
ecad03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
122587470
Exosome [BR:
ecad04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122587470
Exosomal proteins of other body fluids (saliva and urine)
122587470
Exosomal proteins of breast cancer cells
122587470
Exosomal proteins of colorectal cancer cells
122587470
Exosomal proteins of bladder cancer cells
122587470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF8152
Motif
Other DBs
NCBI-GeneID:
122587470
NCBI-ProteinID:
XP_043615588
LinkDB
All DBs
Position
2:complement(45330427..45335256)
Genome browser
AA seq
601 aa
AA seq
DB search
MASITPTMSIGTFGILETKATSKSTHSLSSISATPISSRKRNVALQKRTNSKVKAMAKEL
YFNNDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELED
PVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVQITRGIERTT
KALVAELKLMSKEVEDSELADVAAVSAGNNPEVGNMIAEAMRKVGRQGIVTLEEGKSAEN
TFYVVEGMQFDRGYLSLYFVTDNEKMSVEYENCKLLLVDKKITNARDLVGVLEDAIKGGY
PILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGDRKSQYLDDIATLTGGTVIREEV
GLTLENAESDVLGHAAKVVLSKDTTTIVGDGSTQELVNKRVAQIRNLLEAAEQDYEKEKL
NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAK
VDSIKDTFDNDEQKVGADIVKRALSYPMKLIAKNAGVNGSVVIEKVLASDNPKFGYNAAT
GKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLTSDAVVVAIKEPQSMPAGNPMGNSGYG
F
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcttccataaccccgacgatgtccattggcacattcgggattctcgagacaaaagca
actagcaaaagtacacattcattgtcatctatttctgctactcctatttcaagccgaaag
cgaaatgtagctctgcagaaaagaacaaattctaaggttaaggcaatggccaaagagttg
tattttaacaacgatggttctgcaattaagaagctacaagcaggtgtcaacaagcttgct
gatttagtaggtgtaactcttggtccaaaaggacgcaatgtagtacttgaaagcaagtat
ggatcccctaaaattgtgaatgatggtgtcactgtcgccaaagaggtggaattggaagat
ccggttgagaacattggtgccaagcttgttcgccaagcggcttcaaagacgaatgatttg
gccggtgatgggacaacgacatctgttgttctcgcacaaggtctaatcaccgaaggtgtt
aaggtggtggcggctggtgcaaaccctgttcaaataacaagaggaattgaaagaacgact
aaagcccttgtggcagagcttaagttgatgtcaaaagaagttgaagatagtgagctagca
gatgtggctgcagtgagcgcagggaacaaccctgaagtaggaaatatgattgctgaagcc
atgagaaaagttggaaggcaaggtatcgtgactctagaagaagggaaaagtgctgaaaac
accttttatgttgtggaaggcatgcaatttgaccgtggatacctttcgctgtattttgta
acagacaatgagaaaatgtcagttgagtatgaaaattgcaagttgcttttggttgacaaa
aagataaccaatgcacgagatttagtcggcgtcttggaagatgcaataaaaggggggtac
ccaatattgattatagccgaggatattgagcaagaagctcttgctactcttgtagtgaac
aagctacggggttcattaaagattgcagcactcaaggcccctggttttggtgaccgcaag
agtcaatatcttgatgatattgctactcttaccggaggaaccgtgatcagagaagaggtg
gggttaacccttgagaatgctgaaagtgatgttttagggcatgctgctaaggtggtgctt
agtaaggatacaaccaccattgttggtgatggaagcacccaggaattagttaataaaaga
gttgcccagataagaaaccttcttgaggcagcagaacaggactacgaaaaagaaaagcta
aatgaaagaattgctaaactatctggaggagttgctgtaattcaggttggggcccaaaca
gagacagaacttaaagaaaaaaaactaagagtagaggatgccctcaatgcgacaaaggca
gccgttgaggaaggcattgtagtggggggtgggtgcactcttttacgccttgctgcaaag
gttgatagtataaaagatacctttgacaatgatgaacaaaaggtaggagctgatattgtt
aagagagcccttagctatcctatgaagttaattgcaaaaaatgctggtgtcaatggaagc
gtagtgattgagaaggtactggctagtgataatccaaagtttggttacaatgctgcaacc
ggaaaatatgaggatttaatggctgctggcataattgatcctacaaaggtggtaagatgt
tgcttggagcatgcttcatccgttgcaaagacatttcttacatcagatgcagtggtcgtt
gcgatcaaggagcctcaatcaatgcctgctggaaaccccatgggtaactcaggttatggt
ttctaa
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