Erigeron canadensis (horseweed): 122587478
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Entry
122587478 CDS
T07610
Name
(RefSeq) RNA polymerase sigma factor sigA-like
KO
K03086
RNA polymerase primary sigma factor
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122587478
Transcription machinery [BR:
ecad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
122587478
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
HTH_36
Motif
Other DBs
NCBI-GeneID:
122587478
NCBI-ProteinID:
XP_043615600
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Position
2:complement(29919567..29924255)
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AA seq
497 aa
AA seq
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MMSTTAIGLTAGNRLLGSSCYYSNTNEKLSCSSDIGFTLVFTKNVISAKKSPDYGNSPIS
NPVTNTIRVLKDPSSCTDQWVQTFNHLDKKGSKDELSVESLLLLQKSLLEKQWKISTERN
STTATPNEKINKKVHFTGSQISARRRRLDARKKTTYTCSVKQGVTSKQSKFTLGSELLQN
QSKGYVKGGISEVLLTHSEVVILSNKIKIGLRLEEQKLRLKKKLGTEPSEEQLATSMRIS
RTDLRTKQIECTLAREKLALSNVRLVMSIAQRYDNMGAQMDDLIQGGLIGLLRGIEKYDS
SRGYKISTYVYWWIRQGVSRALMENSRILRLPTHLHERQSAIRNVKIKLEEQGINPSIDR
IAESLNISRKKVTNATRAITKVFSLDRGASLSINGLHGQIFYSDIADTCMENNPWHGVDK
KALKEEVNKLISTTLGERERYIIRLYYGLDNECLIWEDIGKRMGLSREGVRKIGLVALEK
LKNAAKMTKLETMLVEH
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctacaactgcaattggattaacggcaggaaataggctgttgggttcatcttgt
tattactctaatacgaatgaaaaactgtcctgcagtagcgatattgggttcacacttgtc
tttactaagaatgtgatctctgcaaagaaatcacctgactatggtaatagtcctatatcc
aacccagttacgaataccataagagtgctaaaggatccttcaagctgtacagatcaatgg
gttcaaacctttaaccatttggataagaaaggctccaaggatgaactttcggttgaatct
ttgttattgttacaaaagtctttgctcgagaagcaatggaaaatttcaaccgagaggaat
tccacaacagctactcctaacgaaaaaattaacaaaaaagtacactttactggttcacag
atatctgcacgaaggcgaagactagatgctaggaagaaaacaacgtatacttgttctgtt
aagcaaggtgttacaagtaagcagtcgaaatttacacttggttcagagctccttcaaaat
caatctaaaggttatgttaaaggtgggataagtgaggtattgctcactcactcagaagtg
gtcattctatcaaacaaaatcaagattggtttacgcttggaagagcagaaactaagactg
aagaaaaaactgggaactgaaccttcagaggagcaacttgctacttccatgaggatttcc
cgaactgacttaagaaccaaacaaattgaatgcactttggcaagagaaaaacttgcgttg
agcaatgtccgtttagtgatgtcgattgcacaaagatatgataacatgggagctcaaatg
gatgaccttattcaggggggtctaattggactactccgagggatagaaaaatacgattca
tctaggggttacaagatttctacctacgtgtattggtggatacgacagggtgtttcaaga
gcgttaatggaaaattcaagaatcctaagattgcctactcatttacatgaaagacaaagt
gcaatccgaaatgtcaagatcaaactggaagaacaaggaataaacccatctattgatagg
attgcagaaagcctgaatatatccagaaagaaagttacgaacgcgacgcgggcaatcact
aaagttttctcacttgataggggagcttccctttctataaatggtcttcatggacaaata
ttttatagtgacattgcagatacttgcatggagaacaacccatggcatggagtagataaa
aaggctctcaaagaggaagtaaacaagctcatctccacaactcttggggaacgggagaga
tatatcatccgtctttattatggtcttgacaatgaatgccttatttgggaagatattggt
aaaagaatgggattgtcgagagaaggtgttaggaagattggacttgttgcactagagaaa
ctaaaaaatgctgcgaaaatgacaaagcttgagacaatgctggtagaacattga
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