Erigeron canadensis (horseweed): 122588074
Help
Entry
122588074 CDS
T07610
Name
(RefSeq) endoribonuclease Dicer homolog 2-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122588074
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122588074
microRNA pathway
RISC loading complex
122588074
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Dicer_dimer
ResIII
Helicase_C
PAZ
Cas3-like_C_2
SNF2-rel_dom
SWI2_SNF2
dsrm
fvmX2
Motif
Other DBs
NCBI-GeneID:
122588074
NCBI-ProteinID:
XP_043616152
LinkDB
All DBs
Position
2:complement(31128548..31141727)
Genome browser
AA seq
1404 aa
AA seq
DB search
MDDETIFNLQPQKTLKDLIKDPQGSRTPPFLATFYLYQIEALEQAIKQNTIVFLDTGSGK
TLIAIMLLRCYAHLLTKPSSNFAVFLVPTVVLVKQQAEAVRKYLDLKVEEYWGEKKGMDY
WNASDWTKQRDENQVMVMTPAILHDALTHKFLRLDNIKLLIFDECHNAKKRHPYALIMNE
FYHRQLRDGITELPRILGMTASPVKGKGLSSTEDYWKEIKNLENQLNSKVFTCEVAESVP
ISAPQYKYYQSIEFPDQVLKELKCTLLLLREKHEITIKKANISESSMDHSMKRLSKLSSI
FEFCLQELGIWLAVKATEAYACEENDLFTGALDVRGDTIAREFCKDANKAFSSYIPAEWM
ISHINQESVRIGLISAKVVCLLESLAEYRHVNDMRCIIFVERVITAIVLKSLLRELNPKL
FGWRTEYTAGNHSTMQSQSRGVQNKIVEEFRKGMVNIIVATSILEEGLDVQKCNLVIRFD
LSATICSFIQSRGRARMSNSEFVLLIKSGDTETLEKANNYLLSGKLMRDQSLNHASEPCE
PLDSEMLDEDVYCVESTGATLSLSSSIGMVNFYCSRLPSDGYFKPYPSFITDKESGTCTI
LFPKSCPLPRVCIESKGKSKMLKRIACLEACKQLHKMGALTDNLVPDTVEEADDSQEIEY
DYEEEKVQYVPPELVGRLGVDSDKVYHFYSIKLKKNFDYNVEFQDIVLGVKTELELDSQG
LSFELEVDRGTLSASVAYLGMSMFTSEQISLLNKFQLTMFKVLLDHSITELMKSLEVIKS
KKDIMGFEYLLLPSMGLNKASSIFDWNSVRSIQFPHEEKHNCSLTSNNHHQVHTRNGLIC
SCLVESSLVYTPHNGRLYCTTEWLHGMNSNSLLETKEDETITYKDYYKTKYDIDLKYDSF
FLARQLFVVQNFLQRGRHHKEKEIRNVRVQLPSEVCYIIMSPISLSTFYSFSFLPSVMHR
IESWLLAINLKKLHVDHTLSNANVSPLKVLEAITTKKCLESYNLESFEILGDSFLKYAAT
QHLFKSLQNQHEGILSSRREKIISNESLCRLGCRCNILGFIRNEPFDPKAWVIPGDRSAN
LNLEEKVFPTGRRGYIGRKRTLKKKVVADVVESLIGVFLSEGGESAALSFMGWLGIEVDF
GNTLYARTMIPQPEKFVSIDQLESVLSYSFQDPSLLVEALTHGSYMLPEIPRCYQRLEFL
GDAVLDYLMTVHLYRKYPGISPGLLTDLRSASVNNDCYAQSSVRVGLHKHILHGSQVLHR
NIVSAVDDFEQLQLVSTFGWESESTFPKVLGDVIESIAGAILVDSGYDKDQVFRSIRPLL
EPLVTPETLRLHPVKELHDLLQKKHFGIKKSAKRTLEGTISFTIEVEAEGIVFKDSCVAQ
DKKMAERLASKSVLKLIKEIFPGI
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgaaactatcttcaatcttcaaccccaaaaaacattaaaggatcttattaag
gacccacagggatcgcggacccctccgtttttggctacgttttatctgtatcaaattgaa
gctttggagcaagcaatcaagcagaacacaatagtgtttttggatactgggtcaggcaaa
acattgattgcgattatgcttcttcgatgctatgcacatcttttaacaaaaccgtcatcc
aattttgcagtatttttggtgcccactgttgtactagtcaaacagcaagctgaggctgtg
aggaagtaccttgatttgaaagtggaggaatattggggggaaaaaaagggtatggattac
tggaatgcatctgattggacgaagcaacgagatgaaaatcaggtaatggtaatgacacct
gccattttacatgatgcgttgacgcataagtttctacgcttagataatattaagcttttg
atatttgatgaatgccataacgccaaaaaacggcatccgtatgctctcatcatgaacgag
ttctatcaccgccagttacgtgatggtattactgagcttcctaggatactcggtatgaca
gcttcacctgtgaaaggcaaaggtctaagctcaactgaggattattggaaagaaattaaa
aacctcgagaatcaattgaactcaaaggtatttacatgtgaagtggctgagtcagttccc
atatctgcccctcagtacaagtattaccagagtatagaatttcctgatcaggtgttgaag
gagttaaaatgtactttgctgcttttaagagaaaagcatgaaataacaataaaaaaggca
aacatctcggaatcttcaatggaccattcaatgaagaggttatcgaaactatcatcaata
ttcgagttctgtttgcaagagttgggcatttggttggcagtgaaggcgacagaagcatat
gcgtgtgaagaaaatgacctctttacgggggcacttgatgtacgtggagacacaattgct
agagagttctgcaaagatgccaataaagctttctcttcatacataccagctgaatggatg
attagtcacattaatcaggaaagtgtgaggatcggattaatctcagcaaaagttgtgtgc
ttacttgaatcacttgctgaatacaggcatgtaaatgatatgagatgcattatatttgtc
gagagggtgattacagccattgtacttaaaagcttactcagggagttaaaccccaaactg
tttgggtggagaactgaatacactgccggtaatcattctacaatgcagtcacaaagccgt
ggtgttcaaaataaaatcgtggaagagttccgtaaaggaatggtcaatataattgttgca
acatcgatccttgaagaaggtctggatgttcagaaatgcaatcttgtaattcgatttgac
ctctcagccactatttgtagctttattcagtctcgaggccgtgctcgaatgtcaaactca
gaatttgtgttgcttattaaaagtggggacacggagacgttagagaaggcgaacaactac
cttttgagtggaaaactcatgagggatcagtcattaaatcatgcttctgaaccgtgtgag
ccattggatagtgaaatgttagacgaagatgtatattgcgtggaatctactggggcaact
ttaagcttgagttctagcattggaatggttaacttctattgttctagactgccttctgac
gggtatttcaagccttatccgagctttataactgataaggaatcaggaacttgcacaatt
cttttccctaaaagttgcccacttccaagagtctgtattgagagtaagggcaagtcaaaa
atgctgaaacgaatcgcatgccttgaagcatgtaagcaacttcataagatgggagcgtta
acagataatcttgttccggataccgtggaggaagctgatgattcacaagaaatcgagtac
gattatgaagaagaaaaggttcaatacgtgcctcctgagcttgtggggcgattaggagtt
gattcagataaagtgtatcacttttactcaattaagttaaagaagaactttgattacaat
gttgaattccaagatatagtacttggagtgaagactgagttagaactcgatagtcaagga
ttatcttttgaacttgaggtcgatagaggcaccctttctgcttccgtggcttatcttggg
atgtccatgtttacatctgagcagatcagcctattgaacaaatttcaattgactatgttc
aaggtacttcttgatcactctatcacagagttgatgaaatctttagaagtaattaagtca
aaaaaggacataatgggatttgagtatcttctgctgccttcaatgggattaaataaagca
tcatcaatctttgattggaattctgttcgttctattcagtttccacatgaagaaaaacat
aattgctctttaacgagcaacaatcatcaccaagtacacaccagaaatggattaatttgc
agttgtttggtggaaagttcattggtatatacccctcataatgggcgtttgtattgtacc
accgaatggttacatggtatgaatagtaattcgctcttggaaacaaaggaagatgaaaca
atcacctataaagattactacaaaacaaagtatgatattgacttgaagtacgactccttt
tttttagcaagacagctttttgtagttcaaaattttcttcaaagaggcagacatcataag
gagaaagaaataagaaatgtaagggttcagctgccttccgaagtgtgttacattatcatg
tcgccgatatctctaagtaccttctattcattctctttcctaccgtcagtgatgcatagg
atcgagtcatggcttttagccatcaacttaaagaagttgcatgtagatcatactctttca
aatgcaaatgtttcgcccctcaaggtcttagaagcaatcactacaaagaaatgccttgaa
agttataatctggaatcttttgagatcttgggtgattcttttttaaagtatgcagcaact
caacatttatttaaatctctccaaaatcaacacgagggcatcctgagttctcggagggag
aaaataatatccaatgaatcgttatgcagattgggatgtcgctgcaatattctgggattc
atccgtaatgaaccttttgatccaaaggcatgggttattccgggggatcgatctgccaac
ttgaacttggaagaaaaagtgttcccaactgggagaagaggttacattggcaggaaaaga
acattaaaaaagaaagtagtagcggatgttgtagaatcattaattggcgtttttcttagc
gaaggaggtgaatcagcagccttatcatttatgggctggctaggaatagaggttgacttt
ggcaacacgctttatgccagaacaatgataccgcaacctgaaaagtttgtaagcattgat
cagttggaatcggttcttagttattcatttcaggacccatctttacttgttgaagcatta
acacatggttcttatatgctacctgagattccaagatgttaccagcgtttagagtttctt
ggggatgccgtgttggactatttaatgaccgtacacctatataggaaatatcccggaata
tctcctggcctgttgactgatctaaggtctgcatccgtaaacaatgattgttatgcccaa
tcttcggttagagttggactgcacaagcacatccttcacggatcacaagttctgcatcgg
aatatagtgtccgctgttgatgattttgaacaactgcagttggtttctacttttggatgg
gagtctgaaagcacatttccaaaggtacttggagatgtgatagaatcaatagccggggcg
attcttgtggattctggatatgacaaagaccaagtttttcggagcattaggccacttctc
gagccattggtaaccccggagacgctgagacttcatccggtgaaagagttgcatgatctc
cttcaaaagaaacattttggaataaaaaaatctgctaaaaggactcttgagggtaccata
tctttcaccattgaagtcgaagcggaaggaatcgtgttcaaagactcgtgcgtggctcaa
gataagaaaatggctgagagacttgcatccaagtctgttttgaagctcatcaaagaaata
tttcctggcatataa
DBGET
integrated database retrieval system
