KEGG   Erigeron canadensis (horseweed): 122588440
Entry
122588440         CDS       T07610                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like isoform X1
  KO
K14962  COMPASS component SWD2
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    122588440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122588440
   03036 Chromosome and associated proteins [BR:ecad03036]
    122588440
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     122588440
Chromosome and associated proteins [BR:ecad03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     122588440
    COMPASS/SET1 complex (yeast)
     122588440
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_EML_2 WD40 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_Nup120_160 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_WDR75_1st PQQ Beta-prop_SCAP MIOS_WD40 DUF2963
Other DBs
NCBI-GeneID: 122588440
NCBI-ProteinID: XP_043616490
LinkDB
Position
2:6993925..7002341
AA seq 336 aa
MRNASSSVSELNDGIIRNMSIAALFSDFVGKINALDFHRTADLLVTTGEDDSVRLYDIAN
GKLLKTTHHKKHGADRICFSHHPSSVICSSTRNLDSGAESLRYLSMYDNRCLRYFKGHTE
RVVSLCTSPVDDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVSMEG
GAIKLFDSRSYDKGPFDTFLVGGDMAEVWDIKFSNDGKSMLLTTKSNNIYVLDAYNGEKR
CGFSVDASPNTTIEATFTPDGQYVVSGSGDGTLNAWSIPARSKVASWDSNIGVASCLKWA
PRRVMFAAASKGVLTFWIPKGTNSAVASFDYSKEKF
NT seq 1011 nt   +upstreamnt  +downstreamnt
atgaggaacgcatcatcatcagtatcagaactcaacgatggaatcatccgcaatatgtca
atcgctgctcttttttctgattttgttgggaagattaatgcgcttgattttcatcgtact
gcagatctgttggtaacaacaggggaggatgattctgtgcggctatatgacatagcaaac
ggcaagctactgaaaactacacatcataagaaacatggtgctgatcgtatatgtttctct
caccaccctagttctgtcatatgctcttcaacacgcaatttggattcaggtgcagagtct
ctgcgttatctatctatgtatgacaatcgttgccttcgctactttaaggggcatacagaa
agggttgtgtccctctgtacgtctccagttgatgacagcttcatgtctggctctctagat
cactctgtcaggatatgggatcttcgtgtgaatgcctgccagggcatcttacgtctgcga
ggtaggcctacagttgcttatgaccaacaaggccttgtctttgcggtatcaatggaaggt
ggtgctatcaaattgtttgattcacggtcatatgataagggcccatttgacactttcctg
gtgggaggagatatggctgaggtgtgggatataaaattcagcaatgatggtaaatcaatg
cttctgaccaccaagagtaacaacatatatgtcttagatgcatacaatggcgagaagaga
tgcggatttagtgtggatgcttctccaaacacaacaattgaggccacatttacccctgat
ggccaatatgtggtttcaggatctggagatggaacattgaatgcatggagcatccccgcc
agaagcaaggtcgcgagttgggacagcaacataggtgttgcgtcatgcttgaaatgggca
cctcgtcgtgtaatgtttgctgctgcttctaagggagtcctcactttctggatacccaaa
ggcacgaattcagctgttgccagttttgactactccaaagagaaattttga

DBGET integrated database retrieval system