Erigeron canadensis (horseweed): 122588527
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Entry
122588527 CDS
T07610
Name
(RefSeq) nuclear pore complex protein NUP58
KO
K14307
nucleoporin p58/p45
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122588527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122588527
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122588527
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_FG2
VPS13_N
Peptidase_U57
Motif
Other DBs
NCBI-GeneID:
122588527
NCBI-ProteinID:
XP_043616597
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All DBs
Position
2:33812807..33817911
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AA seq
489 aa
AA seq
DB search
MAFSFNTPQQQQPSIFQQTQNSPFQPSAGSPFFPQQQQQQQQQQQQQQQQQQQQSQLFLF
TNDKTPASYGTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCGRLYDSSSVSNDGFEL
DATHILQELGGISTAMDRQKALLHDLTANVKDMLRNTEIAVRSFMMLRSKFSHPNKTSAV
TTSQPPGAITTTTTQPTTSAMVPVYDFYSGMPRKPSPFLQQTVARFEKYLAECRQWVEEL
EQLLLESNRNAMNPTSSLYQSLPKVMSNVHDFFVYVAAKVESIHQYMESMKTAYLADQRG
RGDGNDPFLEADRRETAKRAAAARRIHPTLHLPSNPQPSTQLAGLPASSGTTATSVAPPT
SASAATGGSGLFSTPFSATSSSSSFSTLAPSAPSFNNAFASTASPQTSIFGPSSSSTPSF
FSTPAAGTSTPFAINPSTGASAFSSQFATNPSAGPSPFGSSFTGATSGSGASFNTQSKAR
GAKGRAGRR
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcattctctttcaacacaccacaacagcagcagccatcaattttccaacaaactcaa
aattcaccatttcaaccaagcgccggcagcccttttttcccccaacaacaacagcagcaa
caacagcagcaacaacaacaacaacaacaacaacaacaacaaagccaattgtttttattc
actaatgataaaacaccagcaagttatggtactaaatgggctgaccttcatcctgattct
caaaagttccttcttcaaattgaggagagaatattggagtatagagacgaaagtcaaaga
ttggatcaatgtgggagactttacgattcttcttcggtttctaatgatggatttgagctt
gatgctactcatattcttcaggaacttggtggaatcagtactgcgatggatagacagaag
gctctgcttcatgaccttactgctaatgttaaggatatgctacggaacacagaaattgca
gttcgctctttcatgatgcttcggtccaagttttctcacccaaataaaacctctgctgta
acaacatcacagcctcctggagcgataacaactacaactactcaacctacaacatccgcc
atggtgccagtttatgatttctacagtggcatgccacgaaagccttctccatttttgcaa
caaactgttgccagatttgagaagtatctagctgagtgtcgccaatgggttgaggagctg
gagcagttacttctagaatctaataggaatgcaatgaatcccacctcttcattgtaccag
tctctacccaaagttatgtcaaatgttcatgacttctttgtttacgtggctgcaaaggtg
gagagcattcatcagtatatggagtccatgaaaacagcataccttgctgaccagcgcggt
cggggagatgggaatgatccatttcttgaggctgatcgacgagaaaccgctaaaagagct
gctgcagcccggaggatacatccaactctgcacttaccttctaatccacaaccatcaact
caacttgctgggttgccagcgagctcgggaacaactgcgacatcggttgctccgcccaca
tctgcctcagcggcaacaggtggatctggacttttcagtacgccattctctgccacgtca
tcatcttcgtcgttttcaactcttgccccatctgctccatcatttaataatgcatttgca
tccacggcttctcctcagacatccatttttgggccatcctctagttcaacaccctccttt
tttagtacacctgctgcaggaacctcaacgccatttgccataaacccttctacaggagca
tcagcattttcttcacaatttgctacaaacccttcagcaggaccgtcgccatttggaagt
tcatttacaggagcaacatcaggatcgggggcaagctttaacactcaatctaaagcaaga
ggtgctaaaggtcgcgcagggcggagatag
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