Erigeron canadensis (horseweed): 122588556
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Entry
122588556 CDS
T07610
Name
(RefSeq) uncharacterized protein LOC122588556
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122588556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122588556
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122588556
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122588556
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122588556
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
NuiA_2
Motif
Other DBs
NCBI-GeneID:
122588556
NCBI-ProteinID:
XP_043616626
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All DBs
Position
2:22298506..22305914
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AA seq
586 aa
AA seq
DB search
MMKPNQTSNQTSTPLTLPQPQVNAGMNQQMYNANVVAGLFPNGNNMPNLPPSGFMNFPNF
PLQIGPNGNLQQNFSAFPVTTFNPSQLPPQQQGQFFAQSPMNPTAAPYNQNVGNEQALLQ
STIQNIYQLLQLQNRNNAPQCPPPVGNFPMLQNPIGNVTSLQNPGFIANQQFGMSIPNRP
VMAQQLQGNPFLPGASGLAQAQQLQNFLATATNFQNQISLGVGPQNQNFPANQMFGMPNL
NSPMQHLNQGQQRFPAPMMNANISRQMVSTGQTHNPGSSITNIENNNGNMATNANGGRPE
GLHKNFTGHKGNDASHKGFKSQFHHTKHVKEKGGIRNGIMNKVGTNEAVDSGRNSTSFKK
LPSLNYTEQEIKQWREARKKNFPTSASVEQKCKKAQALSDATNQEAILRRQQLQDILSKQ
AELGCEVAEVPPSYFSGLDNQKPRDKNHEREPYKKGKFQNKRGRFKDNRTTKRRRAGDQD
SFKANNRTHEPKPNEPEPSLLQKLLTRDIKRDKYHLLQVLRFIAVNSFFNGEADKPLRFP
SVVVRETSSGVPDESTFLSRCNEKLEEKELDDEEEEAAEEEGEITD
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagcctaatcaaacttccaatcaaacttccacccctcttacacttccacaacca
caggttaatgctggcatgaatcagcaaatgtacaatgctaatgttgttgctggtttattt
cccaatggtaataatatgccaaatttacctccatcgggcttcatgaatttccctaacttt
ccgttgcaaattggcccgaatggtaatttacaacagaattttagtgcttttcctgtaacc
acgtttaatccttctcaactaccaccacaacaacagggtcagttctttgctcaaagtccc
atgaatccgactgctgcaccatataaccaaaatgttggtaatgagcaagcccttttgcag
agcacaatccaaaatatatatcagcttttacagttacagaaccgcaataatgccccccaa
tgtcctccccctgtgggtaattttcccatgttacaaaacccgattgggaacgttaccagt
cttcaaaatccgggatttattgccaatcagcaatttggtatgtcgattcctaatcgtcct
gttatggcccaacaattacaagggaacccatttctacctggtgcttctggtttagctcaa
gcacagcagctgcagaacttcctcgctactgccacaaattttcagaaccagatttctcta
ggtgtgggtcctcaaaatcagaactttcctgctaatcagatgtttggaatgcctaatctg
aatagccctatgcaacatcttaatcaaggacaacaaagatttcctgcaccaatgatgaat
gctaatatttcaagacagatggtcagtacgggtcaaacgcataatcctggttctagtatt
acaaatatcgagaataataatggaaacatggctaccaatgctaatggtggacggccagag
ggtctacacaaaaacttcacaggccataaagggaatgatgcatcacacaagggattcaag
tcccagtttcatcataccaaacatgtgaaagagaagggtgggattcgcaatggcattatg
aataaagtgggtaccaatgaagcagtagattccggtcgaaattccaccagttttaaaaaa
ttaccctctctgaattacaccgagcaagaaataaagcaatggcgtgaggctcgtaagaag
aatttccctacaagtgcatctgtggagcagaagtgcaagaaagcgcaggcattgtcggat
gcgaccaaccaagaagccatattacgtcgccaacaattgcaggatatattatcaaaacag
gctgagttgggttgtgaggttgctgaagttccaccatcttacttttctggtttggataat
caaaagcctagagataaaaatcacgaaagggagccctacaaaaagggaaagttccaaaac
aaaagaggaagatttaaggataatcgaaccaccaaaagaagaagggcaggagaccaagac
tctttcaaagctaataatcgaacccatgaacctaagccaaatgaaccggaaccatcgctt
ctgcagaagcttttgacccgtgacataaagagagacaaataccatcttttgcaggttttg
aggttcatagcagttaattcgtttttcaatggggaggctgataaacctctaagattccca
tctgtagttgtaagagaaacaagttctggtgtgccagatgagtctacttttctttctaga
tgtaatgagaaattagaggagaaagaattggatgatgaagaagaagaagcagcagaagaa
gagggggaaatcactgattga
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