KEGG   Erigeron canadensis (horseweed): 122588594
Entry
122588594         CDS       T07610                                 
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122588594
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122588594
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     122588594
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     122588594
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 Ribosomal_L27 FapA_N CHASE5 ECR1_N_2
Other DBs
NCBI-GeneID: 122588594
NCBI-ProteinID: XP_043616672
LinkDB
Position
2:3684216..3689928
AA seq 199 aa
MQERSEEEEMVTPGEILGKGTDLIPGKGAYLSRDNHNTVYASLTGRRSLIPPPPDSPDQR
PIVEVIGHKAHGPVPEPGCVVIARVTKVMARMASADIMCVGSKSVREKFSGIIRQQDVRA
TEIDKVDMHTSFRPGDIVKASVISLGDARAYHLSTAQNELGVVSAESMAGGTMVPISWTE
MQCPLTGQIEQRKVAKVGA
NT seq 600 nt   +upstreamnt  +downstreamnt
atgcaagaaaggtcagaagaagaagagatggtgacaccaggtgaaatattggggaaagga
actgatttaataccaggaaagggagcatacttgtcacgtgacaaccacaacactgtttac
gcttctctcaccggccgccgctctctcattcctcccccacccgattctccagaccagagg
ccaatcgttgaagtgattggacacaaagcccatggtcctgttcccgagccaggttgtgtt
gttattgcacgagtaacaaaggtgatggctaggatggcttcagcagatattatgtgtgtt
ggttcaaaatcagttcgagaaaagttttctggtatcatcaggcaacaagacgtcagagca
accgagattgacaaagtagacatgcatacatccttccgtcctggtgacattgtgaaagct
tcagtcatctctttgggagatgctcgtgcatatcatctttctactgcacagaatgagctg
ggtgttgtatcagcagaaagcatggcaggggggacaatggttccaatcagttggacagag
atgcagtgtccactgacaggccaaatcgagcagagaaaagttgctaaagttggagcctga

DBGET integrated database retrieval system