Erigeron canadensis (horseweed): 122588594
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Entry
122588594 CDS
T07610
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122588594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122588594
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122588594
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
122588594
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Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Ribosomal_L27
FapA_N
CHASE5
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
122588594
NCBI-ProteinID:
XP_043616672
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All DBs
Position
2:3684216..3689928
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AA seq
199 aa
AA seq
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MQERSEEEEMVTPGEILGKGTDLIPGKGAYLSRDNHNTVYASLTGRRSLIPPPPDSPDQR
PIVEVIGHKAHGPVPEPGCVVIARVTKVMARMASADIMCVGSKSVREKFSGIIRQQDVRA
TEIDKVDMHTSFRPGDIVKASVISLGDARAYHLSTAQNELGVVSAESMAGGTMVPISWTE
MQCPLTGQIEQRKVAKVGA
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaggtcagaagaagaagagatggtgacaccaggtgaaatattggggaaagga
actgatttaataccaggaaagggagcatacttgtcacgtgacaaccacaacactgtttac
gcttctctcaccggccgccgctctctcattcctcccccacccgattctccagaccagagg
ccaatcgttgaagtgattggacacaaagcccatggtcctgttcccgagccaggttgtgtt
gttattgcacgagtaacaaaggtgatggctaggatggcttcagcagatattatgtgtgtt
ggttcaaaatcagttcgagaaaagttttctggtatcatcaggcaacaagacgtcagagca
accgagattgacaaagtagacatgcatacatccttccgtcctggtgacattgtgaaagct
tcagtcatctctttgggagatgctcgtgcatatcatctttctactgcacagaatgagctg
ggtgttgtatcagcagaaagcatggcaggggggacaatggttccaatcagttggacagag
atgcagtgtccactgacaggccaaatcgagcagagaaaagttgctaaagttggagcctga
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integrated database retrieval system