Erigeron canadensis (horseweed): 122588620
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Entry
122588620 CDS
T07610
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122588620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122588620
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122588620
mRNA degradation factors
5'-3' decay
Lsm complex
122588620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
122588620
NCBI-ProteinID:
XP_043616709
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All DBs
Position
2:46579140..46582566
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AA seq
128 aa
AA seq
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MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELELEKEELPPHMTRVSEAEIKRAQKVEREATDLKGTMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggcgggacctgaagatatatatctttctacttctcttgccagctatcttgac
aagaagcttcttgtattgctgcgagatggtaggaagctattggggatactgcgttctttt
gatcaatttgccaatgctgtccttgaaggtgcatgtgagcgagtaattgtcggcgatctt
tattgtgacattccattaggtctatatgtaattcgtggcgagaatgttgtcttaattggc
gagctggagttggagaaggaggaacttccccctcatatgactcgtgtttctgaagctgag
ataaaaagggctcagaaggtggagagggaggcaacggatctgaagggtacaatgagaaaa
aggatggaatttcttgatatggactaa
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