KEGG   Erigeron canadensis (horseweed): 122588620
Entry
122588620         CDS       T07610                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122588620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122588620
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122588620
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     122588620
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 122588620
NCBI-ProteinID: XP_043616709
LinkDB
Position
2:46579140..46582566
AA seq 128 aa
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELELEKEELPPHMTRVSEAEIKRAQKVEREATDLKGTMRK
RMEFLDMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcgtgggcgggacctgaagatatatatctttctacttctcttgccagctatcttgac
aagaagcttcttgtattgctgcgagatggtaggaagctattggggatactgcgttctttt
gatcaatttgccaatgctgtccttgaaggtgcatgtgagcgagtaattgtcggcgatctt
tattgtgacattccattaggtctatatgtaattcgtggcgagaatgttgtcttaattggc
gagctggagttggagaaggaggaacttccccctcatatgactcgtgtttctgaagctgag
ataaaaagggctcagaaggtggagagggaggcaacggatctgaagggtacaatgagaaaa
aggatggaatttcttgatatggactaa

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