Erigeron canadensis (horseweed): 122588655
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Entry
122588655 CDS
T07610
Name
(RefSeq) phragmoplastin interacting protein 1
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122588655
03036 Chromosome and associated proteins [BR:
ecad03036
]
122588655
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122588655
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
122588655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
RRM_1
zf-CCHC_6
CpXC
zf-CCHC_4
zf-CCHC_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
122588655
NCBI-ProteinID:
XP_043616746
LinkDB
All DBs
Position
2:complement(26910204..26919383)
Genome browser
AA seq
770 aa
AA seq
DB search
MVLSNKKLKQILRALPSKEESQPNINNDPQTPHQILATQKPILTKREIRRRRKVETPQNL
EKSLDLEKKESESKDGGLKEINNKKRKREKDEDLGEKKTSKKKNKKKKTKKKKVKVEESV
KKENVENEEKGKVEVKKEIVKSEEQVKVKMEVEESVKNEFVESEEQVKVKVEEIPTQISK
EDESISTKIYVGGIPYYSTVDDIRSFFEGCGSITEIDCLKFPETGKFNGIAMISFRTDAA
AKRALTLDGSDMGGLLLKVQPYKANREKKVSDFAPAMLDGYNRIYVGNLSWDMTEDDLKK
FFSDCSISSIRLGKDKETGEFRGFAHVDFSDSLSLTMALKLDQKLLSGRPVRVRCAVPPK
SANPSSKSDSTAGKNEGTAKFVHVGASGDMVVDDAARKAKRQTCYECGEKGHHSSSCPNK
KAADMSHTDSKTNDIAFYKENDAIGDGMLKRRTCYECGEKGHLSSSCPNKKAANVAYTSY
RTDDMVFNNETEEADHTSDGKLKRRSCYECGEKGHLSSSCPKKQATDVANTGRGTFASVV
AADINGNDYNMVNSVSDGKLRRRTCYECGERGHLSSACPKKPAAGEVNTIKEPNDDVVKK
AELMVVGKDVGDNMASSISDGKLRRRTCYECGERGHLSSLCPKKQAADVANVKNVNDIKV
EKANVVIVGKEAGDGMESSVSEGKLRRRTCYECGERGHVSSLCPIKQAADVANSSKDDDA
MEVEMVEVVKTTSVASVSSGKIKRRICYECGLKGHLSSLCPNKLQTGLTA
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggttttatcaaacaagaaactaaagcaaattctaagagcccttccatcaaaagaagaa
tctcagcccaatatcaataatgacccacaaaccccccatcaaattttagcaacccagaaa
cccattttaactaaaagagaaatccgccgccgccgaaaagttgaaaccccccaaaatctt
gaaaaaagtttggatcttgaaaagaaagaaagtgaaagtaaagatggtggattgaaagaa
attaacaataagaagagaaagagagagaaagatgaggacttgggtgaaaaaaagacaagc
aaaaagaaaaataagaaaaagaagactaagaaaaagaaggtgaaggtggaagagagtgtg
aaaaaagaaaatgttgaaaatgaagagaaaggtaaggtggaggtgaaaaaggaaattgtt
aaaagtgaagagcaagttaaggtgaagatggaggtggaagagagtgtgaaaaatgaattt
gttgaaagtgaagagcaagttaaggttaaggtggaggaaattccaactcaaattagtaaa
gaagatgaaagtatttctacgaagatatatgttggaggcattccatactactcaactgtg
gatgatattcggagtttctttgaaggttgtggcagcataactgaaatagactgtctcaag
tttcctgagaccgggaagttcaatgggattgccatgataagttttcggactgatgctgca
gcaaagagagcgttgacacttgatggttcagatatgggtggactgttactcaaggttcaa
ccatataaggctaacagagagaaaaaagtttccgactttgctcctgcaatgttggatggc
tacaacaggatctatgtaggaaatttgtcatgggatatgactgaagacgatttaaagaaa
ttcttttcagattgcagtatatcttctattcgccttggcaaggacaaagaaacaggggaa
ttccgaggttttgcccatgtggatttttccgacagtttgtctttaacaatggcattaaaa
ttggatcaaaaacttctttctgggagacctgtgagagttaggtgtgcggtcccaccaaaa
tcagctaacccaagctcaaaatcagactccactgccggtaaaaatgagggcactgctaaa
tttgtgcatgtgggtgcaagcggtgatatggttgttgatgatgcagcacgaaaagcaaag
aggcaaacatgctacgagtgcggtgaaaagggccatcattcttcatcatgcccaaacaaa
aaggctgctgatatgtcacacacagatagcaaaactaatgatatagcgttttataaagag
aatgatgccattggtgatggcatgctgaaaaggaggacatgctatgagtgtggtgaaaag
ggtcatctttcttcatcttgcccaaataaaaaggctgcaaatgtggcatacacaagttac
agaactgatgacatggtatttaacaatgagacagaggaggctgatcacaccagtgatggt
aagcttaaaaggaggtcctgctatgagtgtggtgaaaagggacacctttcttcatcttgc
ccgaaaaagcaagctactgatgtggcaaacacgggtaggggaacttttgcttctgtggtt
gctgccgatattaatgggaatgactacaatatggtcaattctgttagtgacggtaagcta
cggaggagaacatgctatgaatgtggtgaaagaggtcatctatcgtcagcatgcccaaag
aaaccagctgctggtgaggtaaatacaataaaggaacctaatgacgatgtagttaagaaa
gctgagctgatggttgttggcaaggatgttggtgataatatggcgagttccattagtgat
ggtaagctaaggaggaggacatgctatgaatgtggtgaacggggtcatctatcatcacta
tgcccaaagaaacaagctgctgatgtggcgaatgtaaagaacgttaatgacataaaggtt
gagaaagctaatgttgtcattgttggcaaggaagctggtgatggtatggaaagttctgtt
agtgaaggtaagctaagaaggaggacatgttatgaatgtggtgaaaggggtcatgtatca
tcattatgcccaattaaacaagctgctgatgtggcaaattcaagcaaggatgatgatgcc
atggaagttgaaatggttgaggtggttaaaactacgtcggtggcttctgttagcagtggt
aagataaagaggaggatttgttatgagtgtggtttgaaaggtcatctttcgtcattgtgt
cccaacaaattacaaactggtttgacggcgtag
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