Erigeron canadensis (horseweed): 122588992
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Entry
122588992 CDS
T07610
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122588992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122588992
03036 Chromosome and associated proteins [BR:
ecad03036
]
122588992
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122588992
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122588992
PBAF complex
122588992
GBAF(ncBAF) complex
122588992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
GRXCR1_C
Zn_ribbon_2
Motif
Other DBs
NCBI-GeneID:
122588992
NCBI-ProteinID:
XP_043617154
LinkDB
All DBs
Position
2:complement(43382714..43386912)
Genome browser
AA seq
629 aa
AA seq
DB search
MEKNSQFLKPFIPADDHRFQFELYTIPATSDWFSWDNIHEIEKTSLKEFFDASSLTRNPR
VYKEYRDFIISKYREDPSRRLTFSEVRKSLVGDVTYLLKVFSFLDKWGLINFGAPKASDA
DNDGDEDQKWKVKVEDGPPHSMRVVAIPNSLKPVLLPDSVSDKSGFRDVESDFKMPPLSS
HSDVYQDLIALVCGSCKGPCKSGHYEYTKDGSSILCSKCFKNGSYGVNKSADDYKFVAHN
PENESHVVAWTEAETLLLLESVLKHGDDWDLVAQNVQTKSKLDCISKLIQLPFGQLMLGP
SYDRFRKRDTNNITNNQKRVQGGPQATQDAKDIGSQHVELESKSQQNGDIDSEGPPPKRI
CITPISDSKDHEMELTKDEEEQEEPLVVLSEEIREEDTQDFVLKNHKQQDGEDSQGLEIK
NYKQQDGGLEDHGPVKKGYSKPLLNMGNSLMQQIARISAVVGPHVAASAAEAAVTALCDE
NEIPKEIFDIEEDGKEPERIAQGNGSEMDTRPDKLVEKGVIPLQLRMRATSATALGAAAA
HAKLLALQEDREVESLVSAVVNTQLKKLQHKMELLKELEAIMEKESAQMVELEESLLTER
MDAAQKAIDAGLGRWRDRMIAKSPVETIL
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaactcacaatttttaaaaccattcattcccgccgacgatcatcgcttccaa
ttcgaactctacaccatccccgccacttccgattggttttcttgggataatattcatgaa
attgagaaaacgtcgttaaaagagttttttgatgctagttcattgactagaaaccctagg
gtttacaaagagtatagagattttattatttccaagtacagggaagatccttctagaagg
ttaactttttccgaagtcaggaaatctttggttggcgatgttacttatttgcttaaggta
ttttcgtttctcgataaatggggtttgattaatttcggtgctcccaaagcgagtgatgcg
gataatgatggtgatgaggatcagaaatggaaggttaaagtggaagatgggcctcctcat
agtatgagggttgttgccatccctaattctttgaagccggttttgttaccggatagtgtg
agtgataagagtggctttcgtgatgtggagagtgatttcaaaatgccgccactttcgtct
cattcggatgtttaccaggatttgattgctttggtttgtggcagttgtaaggggccgtgc
aagtctggtcattatgagtataccaaggacgggagttctatactttgcagcaagtgcttc
aaaaatggatcttatggagtgaacaagtcggctgatgattacaaatttgttgcccacaat
cctgaaaatgagagtcatgttgtggcatggactgaagcagaaacattacttcttctagaa
tctgtattgaaacatggagatgactgggatcttgtagctcaaaatgttcaaactaagagc
aaactagattgtatttcaaaacttatacagttaccttttgggcaacttatgttgggaccc
tcatatgatagatttagaaagcgggacaccaataacattacaaacaatcagaaacgagta
caaggaggccctcaagccactcaggatgctaaagatattggaagtcaacatgttgaactt
gaaagcaagagtcaacagaatggtgacattgatagtgaaggccctcctccaaagagaata
tgcattacaccaatttcagattccaaagaccatgaaatggagctgacaaaggatgaagag
gaacaagaagagccgttggtagttctatctgaagagattagagaagaagatactcaagat
tttgtgctcaagaatcataagcagcaggatggagaagatagtcaaggtttagagattaag
aattataagcagcaggatggaggcttggaggaccatggtccagtgaagaaaggctattca
aagccgcttctcaatatgggcaattcattgatgcagcagattgctcgcatatctgctgtg
gttggtccacatgttgcagcttctgcagctgaagctgctgttacagctctttgtgatgaa
aatgaaattccaaaggaaatttttgatattgaagaagacggaaaggagcctgaaaggatt
gcccaaggcaacggatcagagatggatacaaggcccgataaattagtagaaaagggtgta
atacctttacaattaaggatgagagctacaagtgcaacagctcttggtgctgctgctgcg
catgccaaattattagcactccaagaagatagagaagttgaaagtctggtgtcagcagta
gttaatacgcagttaaagaagctgcaacataagatggagctactgaaagagctagaggcg
ataatggaaaaagagtctgctcagatggtggagctggaagaatcactactaacagagcga
atggatgctgcgcagaaggccattgatgctgggttaggtagatggagggatcgtatgatt
gcgaagtccccagtagagactatactctaa
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