Erigeron canadensis (horseweed): 122588994
Help
Entry
122588994 CDS
T07610
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122588994
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122588994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122588994
NCBI-ProteinID:
XP_043617157
LinkDB
All DBs
Position
2:24158038..24164184
Genome browser
AA seq
505 aa
AA seq
DB search
MLYSSFYHTKKMHPPNTYILLFCLMTSFFSAIRATLNLTLPYQHPNPEAVVQEVQRRLNV
SIHRRELLDIAGNCLTGNPIDDCWKCDPNWFNDRQHLADCSIGFGRFALGGKGGQYYIVT
DSSDNDPVNPIPGTLRHAALQTEPLWIVFASSMLIRLKHELIVNSYKTIDGRGVNVDITG
GGCITVQYVTNVIIHNIRVYNCKPSGNTDIRSSPTHVGRRGLSDGDGISISGSRNIWIDH
CSFAHCTDGLIDAILGSTAITISNSYFTNHNEVMLMGHDDAYLPDKGMQVTFAFNHFGRG
LIQRMPRCRHGYFHVVNNDFTEWKMYAIGGSANPTINSQGNRYIAPPDPNAKEVTKRVDA
NEKNWVGWNWRTDGDLMENGAFFVPSGQDLNDMYAKASSVNPQSAYLIDQLTMNAGVFGQ
PREVGSVSFGGGPITRPGDGGAGRNGGSNPNDDDYFGIIFGSGAVARSPAPTTLFLNSLI
LLVIYITISTNGGVLFTLLLSFPLL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgttatattcttctttttatcacacaaaaaaaatgcatcccccaaacacatacattctc
ttgttttgccttatgacctctttcttctctgccattagggccactcttaatctcacactt
ccttatcaacaccctaatcccgaagctgttgttcaagaagtacaaaggagattaaatgta
tctatacatagaagagaattgttggacatagcaggcaattgtctcactggaaacccaata
gacgattgctggaaatgcgatccaaattggttcaatgaccggcaacatcttgcagactgc
agcattgggtttggccggtttgcattaggtggaaaaggcggtcaatattacatagtcaca
gattcgtcagataacgacccagtgaacccaattccaggcactctaaggcacgcagcctta
caaaccgaacccttatggatcgtatttgcatcaagcatgctcattagactcaaacatgaa
ctcattgtcaatagttataaaacaatagatggccgaggggtcaacgttgatataactggt
ggaggttgtatcacagttcagtatgtaacaaatgtgatcattcataatattcgggtttat
aattgtaaaccatctgggaacacggatatacgatcaagtccaacgcacgttggacgtaga
gggttatctgatggtgatgggatttcgatatcagggtcaagaaatatatggattgatcat
tgttcatttgctcattgtactgacggtttgatagatgcaattttggggtcaactgctatc
actatttcaaatagttattttactaatcataatgaagttatgcttatgggacatgatgac
gcgtacttaccagataaaggaatgcaggttacgtttgcgtttaatcattttggcagaggt
ctgatacaaagaatgccgcggtgtagacatgggtattttcatgtagtaaacaatgatttt
actgaatggaagatgtatgcaattggtggaagtgcgaatccaactatcaatagtcagggt
aatcggtacattgcaccaccagacccgaatgcaaaggaggtgacaaaacgagtggacgca
aatgagaagaattgggttggatggaattggagaacggatggagacttgatggaaaatggt
gcgttttttgtgccttctggtcaagacctaaacgacatgtatgcaaaggcgagtagtgtt
aatcctcagtcagcctacctcatcgatcaactcacgatgaatgccggtgtcttcggtcag
ccaagggaagtggggagtgtgtcgtttggtggtggtccaataacaagaccaggagatggt
ggtgcaggtaggaatggtggcagcaaccctaatgacgacgattattttggaataatattt
gggagcggcgcagtcgcaagatcaccggcacccaccaccctttttttgaattctctaatt
cttttagttatttacatcaccatcagtactaatggtggtgttttatttacattattatta
tcattcccattactatag
DBGET
integrated database retrieval system
