Erigeron canadensis (horseweed): 122589013
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Entry
122589013 CDS
T07610
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X1
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122589013
Enzymes [BR:
ecad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122589013
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122589013
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PA
zf-RING_2
zf-RING_11
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-ANAPC11
Prok-RING_4
AF_0924
Motif
Other DBs
NCBI-GeneID:
122589013
NCBI-ProteinID:
XP_043617177
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All DBs
Position
2:37478569..37482438
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AA seq
467 aa
AA seq
DB search
MGFVNSDKMLNIWVFSCCFMCFVMAYSGVFANVVLMGNNLTLSFDDIEANFAPPVKSSGE
CGTLFLAEPLDGCRPLKNNSIEDSVNPPFVLMIRGGCSFEDKVRRAQSAGYKAAIVYNND
DSDLVASLLYKSSAGVKDSMLAGNTAGIVIHAVFVSKASGLKLSKYAGVTSMELWIIPSY
ENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRDRPQASRVREFHGMSSRLVKAMPSL
IFTAVLEDNCTSATCAICLEDYSVGDKLRILPCRHKFHTICVDAWLTSWRTFCPVCKRDA
RTATGEPPASERTPLLSSNPASMASSTILSSAYSSSYASSRAIQIGQTSRTNSNIHSVSS
TPYNLHSLQSNNQSPYITPSRSSLDIRNLASSSNRSRAPHLISSNSLGYPSLSPLNSRYL
SSSYYHSPGNASSSYMRSSGQQPYLLRHTDSAASFSPYASGHSLPEC
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgggttttgtaaattcggataagatgttgaatatttgggtgttttcttgttgctttatg
tgttttgttatggcttatagtggggtgtttgctaatgttgttttgatgggaaataatctt
actttatcttttgatgatattgaagctaattttgctccacctgtgaaaagttctggggaa
tgtggaacattgtttttagcagagccactggatggttgtcgacctttgaaaaataattcc
attgaagatagcgtgaacccaccttttgtattaatgattagagggggatgtagttttgag
gataaagttcgaagagcacaatctgctggatacaaggccgccatcgtttataacaatgat
gatagtgatctagttgcaagtctgctttacaaatcgagtgctggtgtcaaggattcaatg
ttggcagggaatacagccggtatagtgatacatgctgtatttgtttcaaaagcatctggt
ctaaagcttagcaaatacgctggtgtaacttcaatggagttgtggattattccaagttat
gaaaattcagcatggtcaattatggccatatctttcatttcattgctggctatgtctgcg
gttttggcaacatgtttctttgtccgcaggcatcgtatcagacgagatcgcccgcaagct
tctcgtgttcgggaattccatgggatgagtagtcggttagttaaagccatgccaagccta
atatttacagcagttttggaagataattgtacttcagctacatgtgctatatgtcttgag
gattatagtgtcggggataagcttagaattctgccatgccgtcacaaatttcacacaata
tgtgtggatgcttggctgacttcctggagaacattttgccctgtatgcaaacgtgatgca
aggactgccacgggtgagccaccagcctcagagcggacaccattactttcatccaaccca
gcttcaatggcttcgtcaactatattatcttctgcatattcatcatcttatgcatcatcg
agagcaatacaaataggtcaaacatcacgtacaaattctaacattcattctgtatccagt
acaccttataatctccactccctacaaagcaataatcaatccccttatattactccatca
agaagctcattagacattagaaaccttgcatcttcttccaatagatcccgtgcgcctcat
ttgatatcttcaaactcactgggttacccttctttgtcacctctaaattccagatacttg
tcttcttcatattatcacagcccaggcaatgcttcatcgagttatatgcggtcttctggt
cagcagccgtaccttttgcgccatactgactcagctgctagtttttctccttatgcctcg
ggtcattctcttccagaatgttga
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