Erigeron canadensis (horseweed): 122589542
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Entry
122589542 CDS
T07610
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122589542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122589542
03036 Chromosome and associated proteins [BR:
ecad03036
]
122589542
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122589542
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122589542
PBAF complex
122589542
GBAF(ncBAF) complex
122589542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
122589542
NCBI-ProteinID:
XP_043617775
LinkDB
All DBs
Position
2:8135387..8138097
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AA seq
546 aa
AA seq
DB search
MNNNSNNMNNPPKNNAHFGNPNTHLHPQSQSQQPTGSSFASQFQLSQYAAAHAHAQAIAQ
AQSKAQAQALAQAQVNQAQYHAQLQAGNQGMSVNQSHPHGLGHFSGNSSAFPGSGNVGMI
KRGMVQKPVGRPPGVSNANTVSPMRMMELTPGQRNKKKQKLPEKQLLERVARILPQSALY
TELVEFESRVDAALARKKMDIQDAIKNPPCIQKTLRIYVFNTFANQDRKIPAKPNEEPPS
WTMKIIGRILEEGLDPDQAGIMQTSNPLYPKFSAFFKRVTISLDQRLYPDNHMIVWDSAR
TPTPHEGFEVKRKGDKEFNANIRLEMNYVPEKYKLSAALMEVLGIEVDTRSRIIAAIWHY
VKARKLQNADDPSYFNCDPALKKVFGEDKMKFTFVSQKISQHLSPPQPIHLEHKIKLSGN
SPAGNACYDVLVDVPFPVQRELNALLATTEKAKEIEACDEAICTSIRKINEHRKRRAFFL
GFSQSPVEFIDALIESQGRDLKIAAGETSRNPEKEHRAEFYNQPWVEDAVIRYLNRRPAK
VVNGST
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaatagcaataatatgaataacccccctaaaaacaatgcccattttggaaac
cctaacacccatctccacccacaatcccaatctcaacaaccgaccggctcgtcttttgcg
agccagttccagctttcgcagtacgctgcggcccatgcccatgcccaggccatagctcag
gcccagtctaaagctcaggctcaagctctagcccaagctcaagtgaatcaagcacagtat
catgcccagttacaggccgggaatcaagggatgtcggttaatcaatcgcatccacatggg
cttgggcatttctcgggtaactcgtctgcgtttcccgggtcgggtaatgttggaatgatt
aaacggggtatggttcagaagccggttggaagaccacctggggtgtcgaatgcgaatacg
gtttctccaatgaggatgatggagcttacccccggtcaacgtaataaaaagaaacagaag
cttcctgagaagcagttgttggaacgggtggcgaggattttaccgcagtcagctctttat
acggagcttgtagagtttgagtcgcgtgtggatgctgctttagcgagaaagaagatggat
attcaagatgcgattaagaaccctccttgtattcagaaaacgctaaggatttatgtgttt
aatacttttgctaatcaagatcggaaaattcctgcgaagcctaatgaggagccgcctagt
tggacaatgaagataataggtagaatcttggaagagggtttggatcctgatcaagctggg
atcatgcagacgtcgaaccccttgtacccaaagttttcagctttctttaagagggttact
atttcgttggaccagagactgtatcctgataatcatatgatcgtgtgggatagtgctaga
acgcctacacctcatgaagggtttgaggtgaaaaggaaaggggataaagaatttaatgca
aatatacggctggaaatgaattacgtgcctgaaaaatacaagctttctgcagctctgatg
gaagttctgggaattgaagtggatactcgctcaagaattatcgctgctatttggcattat
gtgaaggctaggaagttgcagaatgcagatgacccttcttattttaattgcgatccagca
cttaaaaaggtatttggggaagataagatgaagtttaccttcgtttctcaaaagatttca
cagcatttatctccaccacagcctatccatttggagcacaagatcaaactttcgggaaat
agtccagccggaaatgcatgttatgatgtgttggtggatgttccgtttccggtacaaagg
gaattgaatgctttattggctaccactgagaaagccaaagagattgaagcctgtgatgag
gcgatttgtacctcaattaggaagattaatgagcatcgtaaacgacgagctttctttctt
gggtttagtcagtcacctgtcgagtttatcgatgctttgattgaatctcaaggaagagat
ctgaagattgccgcaggggaaacaagtcgtaaccccgaaaaagaacaccgtgcagagttc
tataatcaaccatgggttgaagatgcagtcatccgttacctgaatcgcaggccagctaaa
gttgtcaatggaagtacataa
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