Erigeron canadensis (horseweed): 122589779
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Entry
122589779 CDS
T07610
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1
KO
K28108
shortage in chiasmata 1
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122589779
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Meiosis-specific proteins
Others
122589779
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_PDDEXK_dom
SHOC1_2HhH
ZIP2_M
SHOC1_HhH_tandem
Motif
Other DBs
NCBI-GeneID:
122589779
NCBI-ProteinID:
XP_043618037
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Position
2:28682605..28689556
Genome browser
AA seq
1276 aa
AA seq
DB search
MRTRFITDFFNSTTADTQTLDFLRFPPPDLNSPNLFTFDHLSCFDQFTSIDNTSLDIDTL
SSDAALRKFLSDVLPQHTDVKIDQIPTEISPQVKINDVSDGAAKTNLTLVEFETPALHTS
LEDSCFLHEEKMQIFFEVMSAEEGSQDLLDFSTEVQQLMDINKSIFYVEDLSLKFHEEHR
PDIFEDASLVTGQISSNLRTFPLLEVDETSLGINSYISEDIHMIFETNETQQWMQKDEST
CDAKELLLSMEFDLLEHLLNQPPAASDKFEVPCVNFPPGEDIISAIEHPVNEYSLTLGPP
EFEKFQFFDMNTSHFSEVFSDAEIINEVEHCQQMFGDTILNTFNSLIVSHELILRDDTFR
SLPVPIISDHERVLSVQVIVEELFLKLKPQPSSTSDDIYLDWHFLEEDTFSDNISTSSKM
FEDIETCCIDIEMYPGDSQMLILEFVLSDACSDEKTTKENAEVLNIEKSGNLTDPVFPDG
TASSNLIDICQKRSSGEAFLDNKVDKSHQLPKSMSQFDDLDFFLHPLETTCMKKQKHVAK
KLEMDKSLPLISANCPIEMHHTIQKEWKGSENESIQKQHKFLKNESIQKQHKLLENEFHS
SGDFHPTSMLNTDSKHSGPSHSTLVEEKRSMKSLEATQLLFSTKKVNANTTSLPDAIIIV
NTQNVDTDMIISRRSTYQRILAMEKGGVQVVERDLNLSVDVILSAAVCLVLYDIKNIRRK
TAASDNASSFLPSCVENIAANVLTSLSFAFSSCILIFEGEVGFLACVMELSDELYVAAAS
LGIDLQLFYSYSSETTNEIILNSIAHAAKSTRGLYPRMPESETLAESFLSKFPSLNPLSA
HAILSSVGTLVEFFEMTHKQRVCALQKYLVPDASITLFSALSRYGEREDSRSGMTDCCSS
VSSGHDSGNCCPNELKKRKYPGSPETKAIPVDDLLQFEQSNVTWDFPKVDSHNYWNLNTE
EIPDDIGNSNRGFDKIYAGEKQRSDPCMKMNRPSFSETSFGQSKKVHLPIVDKSVGHTNY
NSKGLVEGYKGEVIDVDDDDAIAVENFSFVNPTHLSSGWCSLPTFPTAAEISSDLDSWIP
TKDNGKSLSAEVTLNSHIDLMNNCTPLEECSLVNSTVNFSMPPFEEKDPLYGRTPLSKAI
LSAQPQKGSPWTIDFLNRMKEKRKMRQQSLPNISSAPCFGHSENSPNFRKRKSPSILDLY
RYQQSSTVQGLEHKRRHVFTQPSSSSKAVKGTASLQSRTPIDKRAKRKLTFATNGSKGQS
RLVWSDKIDQTMQGRL
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgttttatcaccgatttcttcaactcaaccaccgccgatactcaaacccta
gatttcctccggtttccacctcctgacctcaattcccccaatctattcaccttcgatcac
ctctcgtgtttcgatcaattcacttccatagacaacacctctctcgatatcgacacgctt
tcgtccgatgccgctctccgtaagttcctctccgacgtccttccgcaacataccgatgtc
aaaatcgaccaaattccaacggaaatatcaccacaggtgaaaattaatgatgtttcagat
ggtgctgctaaaactaatttgacgttggttgaatttgaaactccggcacttcatacatcc
ttggaagattcttgttttttgcatgaagagaagatgcaaattttctttgaagtcatgagt
gcagaagaaggctcacaggatctgcttgatttctctactgaagtgcaacaactgatggat
attaataaatcaattttctatgtagaagatttaagtttaaagtttcacgaagagcatagg
cctgatatctttgaagatgcgagtttggttacgggccaaatatcttccaatcttagaaca
tttcctcttttggaagtagacgagacaagtctgggaattaatagctatatatcagaagac
atacatatgatatttgaaactaatgaaacccaacaatggatgcaaaaagatgaatcgaca
tgtgatgccaaggagctcttgctatccatggaatttgacttattggaacatcttttaaac
cagcctcctgccgcttccgataaatttgaggtaccgtgtgtgaactttcctccaggagag
gacataattagtgccatagagcacccggtgaatgaatattctttgacattgggcccacct
gaatttgagaaatttcagttctttgatatgaacacctcacatttttctgaagtattctct
gatgctgaaatcataaatgaagtagaacactgtcaacagatgtttggtgacacaatctta
aacactttcaacagcttaattgtctcacacgaacttattctaagagatgatactttcaga
tcactacctgttcctattatttctgatcatgaaagggtactgtcggtgcaagtaattgtt
gaggaattatttttaaagttgaagccgcagccttcttctacttcagatgacatatacttg
gattggcattttttagaggaagatactttcagtgataatatatccacttcttctaaaatg
ttcgaggatatagaaacttgctgtattgatatagaaatgtatccgggtgatagtcaaatg
ctgatattggagtttgttttatctgatgcatgctcagatgagaaaaccacaaaagagaac
gctgaggtactgaacatagaaaagagtggaaatttgactgatcctgtgtttcctgatgga
actgcttcaagtaacttgattgatatatgccagaagaggtctagtggagaagctttcctt
gacaataaggttgacaagtctcatcagcttcctaagtcgatgtcacagtttgatgatctt
gactttttcttgcaccccttggagactacttgtatgaaaaagcaaaaacacgttgctaag
aaacttgaaatggataagtcccttcccctgatttcagcaaactgcccaattgagatgcat
cacaccatccaaaaagagtggaaaggctcagagaatgagtccatccaaaaacagcataag
ttcttaaaaaacgagtccatccaaaagcagcacaagttgttggagaatgagtttcactca
agtggagattttcatcctacttcaatgctaaatacagatagcaagcattcaggaccatca
cattctacacttgttgaggaaaagcgtagcatgaaatcgttggaagcaacacaactgctc
ttttctacaaagaaagtcaatgcaaacacgacttcattacctgatgccatcataattgtg
aacacccaaaatgttgacacagatatgataatttctaggagaagcacataccaacgaatc
cttgcaatggagaaaggaggagtacaggtagttgaaagagatcttaatctgtcagttgat
gttattctcagtgctgcagtttgtttagtgttgtatgatatcaaaaacattagaaggaag
acggctgcttcagataacgcttcttcattcttaccttcatgcgtcgaaaatattgctgca
aatgttttgacatcactcagttttgctttcagtagctgcatactgatatttgaaggagaa
gttggtttccttgcctgtgtaatggaattatcagatgagctctatgttgctgcagcaagt
ctaggaattgacttgcaactcttttattcatattcatctgagacaactaatgagataata
ttgaactctattgcacatgctgcaaagtcaacaagaggcctatatcctaggatgcccgaa
tcagaaactctagctgaatcatttttatccaaatttccttcacttaatccactctcagct
catgcaattttgtcttcggtcggaacgcttgtggagttttttgaaatgactcataagcaa
agggtttgtgccctccaaaagtatcttgttcctgatgcaagtatcacactatttagtgct
ttgtccagatatggggagcgagaggattctagatcaggaatgacagattgctgctcttca
gtttcttctggtcatgactctgggaattgttgtcccaatgagctaaagaaaagaaagtat
cctgggagtcctgagacaaaggccatcccagtggacgatttgttgcagtttgagcaaagt
aatgtcacgtgggattttccaaaagttgattcacataactattggaatttaaacaccgaa
gaaatacctgatgatattggaaactctaatagaggttttgataagatctatgctggtgaa
aagcaaagatctgatccatgtatgaagatgaatcgtccaagtttttctgagacatcattt
ggtcaaagcaagaaagtgcatttgcccattgtggacaagtcagtcggtcacacgaattat
aactcaaaaggtttagttgaggggtataaaggggaagttattgacgttgatgatgatgat
gctatagcagttgagaacttctcttttgtgaaccctacacacttatcatctggttggtgc
agtcttcctactttccctacagctgctgagattagctcagatttagattcgtggattcct
acaaaagataatggaaagagcttgagcgcagaagttacactaaattcacatatagatcta
atgaacaactgcacacctctagaggagtgttcattagtaaactctacagtgaatttcagc
atgccaccttttgaagagaaggatccattatatggtaggacaccactctcgaaagctatt
ttatctgctcaaccacagaaaggatcaccttggactatagattttcttaacagaatgaaa
gaaaagagaaaaatgcgtcagcaatctctgccaaacatatcatctgccccctgttttggt
cactctgagaactcgccaaactttagaaagcgaaaaagtccatctatacttgacctgtat
aggtatcagcagagcagcacggtgcaaggcttggaacataaaaggcgacatgtttttacg
caaccatcaagttcatcaaaagctgtaaagggcactgcctcacttcagtcacggactcca
attgataagagagcaaaaaggaagctaacttttgccaccaacggaagcaagggccaaagt
aggctggtctggagtgataagattgatcaaactatgcaaggaagattgtaa
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